root/galaxy-central/tool-data/lastz_seqs.loc.sample

リビジョン 2, 1.1 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central
行番号 
1#This is a sample file distributed with Galaxy that enables tools
2#to use a directory of 2bit genome files for use with Lastz.  You will
3#need to supply these files and then create a lastz_seqs.loc file
4#similar to this one (store it in this directory) that points to
5#the directories in which those files are stored. The lastz_seqs.loc
6#file has this format (white space characters are TAB characters):
7#
8#<build>        <file_path>
9#
10#So, for example, if your lastz_seqs.loc began like this:
11#
12#hg18   /depot/data2/galaxy/twobit/hg18.2bit
13#hg19   /depot/data2/galaxy/twobit/hg19.2bit
14#mm9    /depot/data2/galaxy/twobit/mm9.2bit
15#
16#then your /depot/data2/galaxy/twobit/ directory
17#would need to contain the following 2bit files:
18#
19#-rw-r--r--  1 james    universe 830134 2005-09-13 10:12 hg18.2bit
20#-rw-r--r--  1 james    universe 527388 2005-09-13 10:12 hg19.2bit
21#-rw-r--r--  1 james    universe 269808 2005-09-13 10:12 mm9.2bit
22#
23#Your lastz_seqs.loc file should include an entry per line for
24#each file you have stored that you want to be available. Note that
25#your files should all have the extension '2bit'.
Note: リポジトリブラウザについてのヘルプは TracBrowser を参照してください。