root/galaxy-central/tool-data/maf_pairwise.loc

リビジョン 3, 43.5 KB (コミッタ: kohda, 14 年 前)

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行番号 
1#This is a sample file distributed with Galaxy that is used by some
2#alignment tools.  The maf_pairwise.loc file has this format (white
3#space characters are TAB characters):
4#
5#<Display_name UID>     <indexed_for:build1,build2,build3>      <exists_in_maf:build1,build2,build3>    <Comma_Separated_List_of_Full_Paths_To_Files>
6#
7#Pairwise (anoGam1,dm2) PAIRWISE_anoGam1_dm2    anoGam1,dm2     anoGam1,dm2     /depot/data2/galaxy/anoGam1/align/dm2/maf/chr2L.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chr2R.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chr3L.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chr3R.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chrM.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chrU.maf,/depot/data2/galaxy/anoGam1/align/dm2/maf/chrX.maf
8#Pairwise (canFam1,hg17)        PAIRWISE_canFam1_hg17   canFam1,hg17    canFam1,hg17    /depot/data2/galaxy/canFam1/align/hg17/maf/chr1.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr10.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr11.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr12.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr13.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr14.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr15.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr16.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr17.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr18.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr19.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr2.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr20.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr21.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr22.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr23.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr24.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr25.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr26.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr27.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr28.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr29.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr3.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr30.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr31.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr32.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr33.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr34.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr35.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr36.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr37.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr38.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr4.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr5.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr6.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr7.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr8.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chr9.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chrM.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chrUn.maf,/depot/data2/galaxy/canFam1/align/hg17/maf/chrX.maf
9#Pairwise (canFam1,mm6) PAIRWISE_canFam1_mm6    canFam1,mm6     canFam1,mm6     /depot/data2/galaxy/canFam1/align/mm6/maf/chr1.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr10.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr11.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr12.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr13.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr14.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr15.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr16.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr17.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr18.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr19.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr2.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr20.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr21.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr22.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr23.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr24.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr25.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr26.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr27.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr28.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr29.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr3.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr30.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr31.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr32.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr33.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr34.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr35.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr36.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr37.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr38.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr4.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr5.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr6.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr7.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr8.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chr9.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chrM.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chrUn.maf,/depot/data2/galaxy/canFam1/align/mm6/maf/chrX.maf
10#Pairwise (canFam2,canFam2)     PAIRWISE_canFam2_canFam2        canFam2,canFam2 canFam2,canFam2 /depot/data2/galaxy/canFam2/align/canFam2/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/canFam2/maf/chrX.maf
11#Pairwise (canFam2,hg17)        PAIRWISE_canFam2_hg17   canFam2,hg17    canFam2,hg17    /depot/data2/galaxy/canFam2/align/hg17/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/hg17/maf/chrX.maf
12#Pairwise (canFam2,hg18)        PAIRWISE_canFam2_hg18   canFam2,hg18    canFam2,hg18    /depot/data2/galaxy/canFam2/align/hg18/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/hg18/maf/chrX.maf
13#Pairwise (canFam2,mm6) PAIRWISE_canFam2_mm6    canFam2,mm6     canFam2,mm6     /depot/data2/galaxy/canFam2/align/mm6/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/mm6/maf/chrX.maf
14#Pairwise (canFam2,mm7) PAIRWISE_canFam2_mm7    canFam2,mm7     canFam2,mm7     /depot/data2/galaxy/canFam2/align/mm7/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/mm7/maf/chrX.maf
15#Pairwise (canFam2,mm8) PAIRWISE_canFam2_mm8    canFam2,mm8     canFam2,mm8     /depot/data2/galaxy/canFam2/align/mm8/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/mm8/maf/chrX.maf
16#Pairwise (canFam2,rn3) PAIRWISE_canFam2_rn3    canFam2,rn3     canFam2,rn3     /depot/data2/galaxy/canFam2/align/rn3/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/rn3/maf/chrX.maf
17#Pairwise (canFam2,rn4) PAIRWISE_canFam2_rn4    canFam2,rn4     canFam2,rn4     /depot/data2/galaxy/canFam2/align/rn4/maf/chr1.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr10.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr11.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr12.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr13.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr14.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr15.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr16.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr17.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr18.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr19.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr2.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr20.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr21.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr22.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr23.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr24.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr25.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr26.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr27.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr28.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr29.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr3.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr30.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr31.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr32.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr33.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr34.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr35.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr36.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr37.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr38.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr4.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr5.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr6.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr7.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr8.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chr9.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chrM.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chrUn.maf,/depot/data2/galaxy/canFam2/align/rn4/maf/chrX.maf
18#Pairwise (danRer2,fr1) PAIRWISE_danRer2_fr1    danRer2,fr1     danRer2,fr1     /depot/data2/galaxy/danRer2/align/fr1/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/fr1/maf/chrUn.maf
19#Pairwise (danRer2,hg17)        PAIRWISE_danRer2_hg17   danRer2,hg17    danRer2,hg17    /depot/data2/galaxy/danRer2/align/hg17/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/hg17/maf/chrUn.maf
20#Pairwise (danRer2,mm6) PAIRWISE_danRer2_mm6    danRer2,mm6     danRer2,mm6     /depot/data2/galaxy/danRer2/align/mm6/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/mm6/maf/chrUn.maf
21#Pairwise (danRer2,tetNig1)     PAIRWISE_danRer2_tetNig1        danRer2,tetNig1 danRer2,tetNig1 /depot/data2/galaxy/danRer2/align/tetNig1/maf/chr1.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr10.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr11.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr12.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr13.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr14.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr15.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr16.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr17.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr18.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr19.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr2.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr20.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr21.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr22.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr23.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr24.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr25.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr3.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr4.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr5.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr6.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr7.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr8.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chr9.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chrM.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chrNA.maf,/depot/data2/galaxy/danRer2/align/tetNig1/maf/chrUn.maf
22#Pairwise (danRer3,fr1) PAIRWISE_danRer3_fr1    danRer3,fr1     danRer3,fr1     /depot/data2/galaxy/danRer3/align/fr1/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/fr1/maf/chrUn.maf
23#Pairwise (danRer3,hg18)        PAIRWISE_danRer3_hg18   danRer3,hg18    danRer3,hg18    /depot/data2/galaxy/danRer3/align/hg18/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/hg18/maf/chrUn.maf
24#Pairwise (danRer3,mm7) PAIRWISE_danRer3_mm7    danRer3,mm7     danRer3,mm7     /depot/data2/galaxy/danRer3/align/mm7/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/mm7/maf/chrUn.maf
25#Pairwise (danRer3,mm8) PAIRWISE_danRer3_mm8    danRer3,mm8     danRer3,mm8     /depot/data2/galaxy/danRer3/align/mm8/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/mm8/maf/chrM.maf
26#Pairwise (danRer3,tetNig1)     PAIRWISE_danRer3_tetNig1        danRer3,tetNig1 danRer3,tetNig1 /depot/data2/galaxy/danRer3/align/tetNig1/maf/chr1.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr10.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr11.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr12.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr13.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr14.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr15.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr16.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr17.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr18.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr19.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr2.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr20.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr21.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr22.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr23.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr24.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr25.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr3.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr4.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr5.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr6.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr7.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr8.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chr9.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chrM.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chrNA.maf,/depot/data2/galaxy/danRer3/align/tetNig1/maf/chrUn.maf
27#Pairwise (danRer4,fr1) PAIRWISE_danRer4_fr1    danRer4,fr1     danRer4,fr1     /depot/data2/galaxy/danRer4/align/fr1/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/fr1/maf/chrUn_random.maf
28#Pairwise (danRer4,hg18)        PAIRWISE_danRer4_hg18   danRer4,hg18    danRer4,hg18    /depot/data2/galaxy/danRer4/align/hg18/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/hg18/maf/chrUn_random.maf
29#Pairwise (danRer4,mm8) PAIRWISE_danRer4_mm8    danRer4,mm8     danRer4,mm8     /depot/data2/galaxy/danRer4/align/mm8/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/mm8/maf/chrUn_random.maf
30#Pairwise (danRer4,rn4) PAIRWISE_danRer4_rn4    danRer4,rn4     danRer4,rn4     /depot/data2/galaxy/danRer4/align/rn4/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/rn4/maf/chrUn_random.maf
31#Pairwise (danRer4,tetNig1)     PAIRWISE_danRer4_tetNig1        danRer4,tetNig1 danRer4,tetNig1 /depot/data2/galaxy/danRer4/align/tetNig1/maf/chr1.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr10.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr11.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr12.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr13.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr14.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr15.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr16.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr17.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr18.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr19.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr2.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr20.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr21.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr22.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr23.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr24.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr25.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr3.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr4.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr5.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr6.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr7.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr8.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chr9.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chrM.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chrNA_random.maf,/depot/data2/galaxy/danRer4/align/tetNig1/maf/chrUn_random.maf
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