root/galaxy-central/tool-data/phastOdds.loc.sample

リビジョン 2, 1.0 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central
行番号 
1#This is a sample file distributed with Galaxy that is used by the
2#phastOdds scores tool.  The phastOdds.loc file has this format (white space
3#characters are TAB characters):
4#
5#<build>        <description>   <path to phastOdds score files>
6#
7#So, for example, if you had hg17 ENCODE regions only, SEP-2005 tba.v2 alignments
8#stored in /depot/data2/galaxy/phastOdds_precomputed/encode_SEP-2005_tba.v2_phastOdds,
9#then the phastOdds.loc entry would look like this:
10#
11#hg17   ENCODE regions only, SEP-2005 tba.v2 alignments /depot/data2/galaxy/phastOdds_precomputed/encode_SEP-2005_tba.v2_phastOdds
12#
13#and your /depot/data2/galaxy/phastOdds_precomputed/ directory would
14#contain all of your alignment files (e.g.):
15#
16#-rw-r--r--   1 james g2cache 56555036 2006-02-22 18:26 encode_SEP-2005_tba.v2_phastOdds.h5
17#-rw-r--r--   1 james g2cache     1367 2006-02-08 12:23 encode_SEP-2005_tba.v2_phastOdds.mapping.bed
18#...etc...
19#
20#Your phastOdds.loc file should include an entry per line for each phastOdds
21#file you have stored.
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