root/galaxy-central/tool-data/regions.loc

リビジョン 3, 1.1 KB (コミッタ: kohda, 14 年 前)

Install Unix tools  http://hannonlab.cshl.edu/galaxy_unix_tools/galaxy.html
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1#This is a sample file distributed with Galaxy that is used by some
2#ENCODE tools.  The regions.loc file has this format (white space
3#characters are TAB characters):
4#
5#<build>        <uid>   <region_description>    <file_path>
6#
7#So, for example, if you had ENCODE Regions for build hg16 stored in
8#/depot/data2/galaxy/regions/encode_regions_coords_hg16.bed, then the
9#regions.loc entry would look like this:
10#
11#hg16    encode_hg16     ENCODE Regions  /depot/data2/galaxy/regions/encode_regions_coords_hg16.bed
12#
13#and your /depot/data2/galaxy/regions/ directory would
14#contain all of your regions files (e.g.):
15#
16#-rw-r--r--   1 dan  g2cache 1367 2006-03-14 13:55 encode_regions_coords_hg16.bed
17#-rw-r--r--   1 dan  g2cache 1367 2006-03-14 13:53 encode_regions_coords_hg17.bed
18#...etc...
19#
20#Your regions.loc file should include an entry per line for each region
21#file you have stored.  For example:
22#
23#hg16   encode_hg16     ENCODE Regions  /depot/data2/galaxy/regions/encode_regions_coords_hg16.bed
24#hg17   encode_hg17     ENCODE Regions  /depot/data2/galaxy/regions/encode_regions_coords_hg17.bed
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