root/galaxy-central/tool-data/shared/ucsc/builds.txt.sample

リビジョン 2, 8.3 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1#Harvested from http://genome-test.cse.ucsc.edu/cgi-bin/das/dsn
2?       unspecified (?)
3hg19Haps        hg19Haplotypes Feb. 2009 (GRCh37/hg19Haps) (hg19Haps)
4hg19    Human Feb. 2009 (GRCh37/hg19) (hg19)
5hg18    Human Mar. 2006 (NCBI36/hg18) (hg18)
6hg17    Human May 2004 (NCBI35/hg17) (hg17)
7hg16    Human July 2003 (NCBI34/hg16) (hg16)
8hg15    Human Apr. 2003 (NCBI33/hg15) (hg15)
9venter1 J. Craig Venter Sep. 2007 (HuRef/venter1) (venter1)
10panTro2 Chimp Mar. 2006 (CGSC 2.1/panTro2) (panTro2)
11panTro1 Chimp Nov. 2003 (CGSC 1.1/panTro1) (panTro1)
12gorGor2 Gorilla Aug. 2009 (Sanger 4/gorGor2) (gorGor2)
13gorGor1 Gorilla Oct. 2008 (Sanger 0.1/gorGor1) (gorGor1)
14ponAbe2 Orangutan July 2007 (WUGSC 2.0.2/ponAbe2) (ponAbe2)
15rheMac2 Rhesus Jan. 2006 (MGSC Merged 1.0/rheMac2) (rheMac2)
16papHam1 Baboon Nov. 2008 (Baylor 1.0/papHam1) (papHam1)
17calJac3 Marmoset March 2009 (WUGSC 3.2/calJac3) (calJac3)
18calJac1 Marmoset June 2007 (WUGSC 2.0.2/calJac1) (calJac1)
19otoGar1 Bushbaby Dec. 2006 (Broad/otoGar1) (otoGar1)
20micMur1 Mouse lemur Jun. 2003 (Broad/micMur1) (micMur1)
21tupBel1 Tree shrew Dec. 2006 (Broad/tupBel1) (tupBel1)
22mmtv    MMTV Nov. 2009 (MMTV/mmtv) (mmtv)
23homPan20        chimp/human Jun. 2008 (UCSC Recon/homPan20) (homPan20)
24homIni20        orang/human Jun. 2008 (UCSC Recon/homIni20) (homIni20)
25sorAra1 Shrew June 2006 (Broad/sorAra1) (sorAra1)
26mm9     Mouse July 2007 (NCBI37/mm9) (mm9)
27mm8     Mouse Feb. 2006 (NCBI36/mm8) (mm8)
28mm7     Mouse Aug. 2005 (NCBI35/mm7) (mm7)
29rn4     Rat Nov. 2004 (Baylor 3.4/rn4) (rn4)
30rn3     Rat June 2003 (Baylor 3.1/rn3) (rn3)
31speTri1 Squirrel Feb. 2008 (Broad/speTri1) (speTri1)
32cavPor3 Guinea pig Feb. 2008 (Broad/cavPor3) (cavPor3)
33oryCun2 Rabbit Apr. 2009 (Broad/oryCun2) (oryCun2)
34oryCun1 Rabbit May 2005 (Broad/oryCun1) (oryCun1)
35ochPri2 Pika Jul. 2008 (Broad/ochPri2) (ochPri2)
36eriEur1 Hedgehog June 2006 (Broad/eriEur1) (eriEur1)
37felCatV17e      Cat Dec. 2008 (NHGRI/GTB V17e/felCatV17e) (felCatV17e)
38felCat3 Cat Mar. 2006 (Broad/felCat3) (felCat3)
39ailMel1 Panda Dec. 2009 (BGI-Shenzhen 1.0/ailMel1) (ailMel1)
40nemVec1 Starlet sea anemone Jun. 2007 (JGI-PDF/nemVec1) (nemVec1)
41canFam2 Dog May 2005 (Broad/canFam2) (canFam2)
42canFam1 Dog July 2004 (Broad/canFam1) (canFam1)
43canFamPoodle1   Dog May 2003 (TIGR Poodle/canFamPoodle1) (canFamPoodle1)
44equCab2 Horse Sep. 2007 (Broad/equCab2) (equCab2)
45equCab1 Horse Jan. 2007 (Broad/equCab1) (equCab1)
46susScr2 Pig Nov. 2009 (SGSC Sscrofa9.2/susScr2) (susScr2)
47pteVam1 Megabat Jul. 2008 (Broad/pteVam1) (pteVam1)
48myoLuc1 Microbat Mar. 2006 (Broad/myoLuc1) (myoLuc1)
49susScr1 Pig Apr. 2009 (SGSC 9.53/susScr1) (susScr1)
50turTru1 Dolphin Feb. 2008 (Broad/turTru1) (turTru1)
51tarSyr1 Tarsier Aug. 2008 (Broad/tarSyr1) (tarSyr1)
52proCap1 Rock hyrax Jul. 2008 (Broad/proCap1) (proCap1)
53oviAri1 Sheep Feb. 2010 (ISGC Ovis_aries_1.0/oviAri1) (oviAri1)
54dipOrd1 Kangaroo rat Jul. 2008 (Broad/dipOrd1) (dipOrd1)
55choHof1 Sloth Jul. 2008 (Broad/choHof1) (choHof1)
56bosTau4 Cow Oct. 2007 (Baylor 4.0/bosTau4) (bosTau4)
57bosTau3 Cow Aug. 2006 (Baylor 3.1/bosTau3) (bosTau3)
58bosTau2 Cow Mar. 2005 (Baylor 2.0/bosTau2) (bosTau2)
59macEug1 Wallaby Nov. 2007 (Baylor 1.0/macEug1) (macEug1)
60dasNov2 Armadillo Jul. 2008 (Broad/dasNov2) (dasNov2)
61dasNov1 Armadillo May 2005 (Broad/dasNov1) (dasNov1)
62echTel1 Tenrec July 2005 (Broad/echTel1) (echTel1)
63loxAfr3 Elephant Jul. 2009 (Broad/loxAfr3) (loxAfr3)
64loxAfr2 Elephant Jul. 2008 (Broad/loxAfr2) (loxAfr2)
65loxAfr1 Elephant May 2005 (Broad/loxAfr1) (loxAfr1)
66monDom5 Opossum Oct. 2006 (Broad/monDom5) (monDom5)
67monDom4 Opossum Jan. 2006 (Broad/monDom4) (monDom4)
68monDom1 Opossum Oct. 2004 (Broad prelim/monDom1) (monDom1)
69ornAna1 Platypus Mar. 2007 (WUGSC 5.0.1/ornAna1) (ornAna1)
70galGal3 Chicken May 2006 (WUGSC 2.1/galGal3) (galGal3)
71galGal2 Chicken Feb. 2004 (WUGSC 1.0/galGal2) (galGal2)
72taeGut1 Zebra finch Jul. 2008 (WUGSC 3.2.4/taeGut1) (taeGut1)
73anoCar1 Lizard Feb. 2007 (Broad/anoCar1) (anoCar1)
74xenTro2 X. tropicalis Aug. 2005 (JGI 4.1/xenTro2) (xenTro2)
75xenTro1 X. tropicalis Oct. 2004 (JGI 3.0/xenTro1) (xenTro1)
76danRer6 Zebrafish Dec. 2008 (Zv8/danRer6) (danRer6)
77danRer5 Zebrafish July 2007 (Zv7/danRer5) (danRer5)
78danRer4 Zebrafish Mar. 2006 (Zv6/danRer4) (danRer4)
79danRer3 Zebrafish May 2005 (Zv5/danRer3) (danRer3)
80tetNig2 Tetraodon Mar. 2007 (Genoscope 8.0/tetNig2) (tetNig2)
81tetNig1 Tetraodon Feb. 2004 (Genoscope 7/tetNig1) (tetNig1)
82fr2     Fugu Oct. 2004 (JGI 4.0/fr2) (fr2)
83fr1     Fugu Aug. 2002 (JGI 3.0/fr1) (fr1)
84gasAcu1 Stickleback Feb. 2006 (Broad/gasAcu1) (gasAcu1)
85oryLat2 Medaka Oct. 2005 (NIG/UT MEDAKA1/oryLat2) (oryLat2)
86oryLat1 Medaka Apr. 2006 (NIG/UT MEDAKA1/oryLat1) (oryLat1)
87petMar1 Lamprey Mar. 2007 (WUGSC 3.0/petMar1) (petMar1)
88borEut13        Boreoeutherian Apr. 24. 2006 (UCSC Recon/borEut13) (borEut13)
89canHg12 Boreoeutherian Nov. 19. 2005 (UCSC Recon/canHg12) (canHg12)
90rodEnt13        Rodent Apr. 24. 2006 (UCSC Recon/rodEnt13) (rodEnt13)
91priMat13        Primate Apr. 24. 2006 (UCSC Recon/priMat13) (priMat13)
92nonAfr13        Non-Afrotheria Apr. 24. 2006 (UCSC Recon/nonAfr13) (nonAfr13)
93lauRas13        Laurasiatheria Apr. 24. 2006 (UCSC Recon/lauRas13) (lauRas13)
94homIni14        Hominidae Oct. 1. 2006 (UCSC Recon/homIni14) (homIni14)
95homIni13        Hominidae Apr. 24. 2006 (UCSC Recon/homIni13) (homIni13)
96gliRes13        Glires Apr. 24. 2006 (UCSC Recon/gliRes13) (gliRes13)
97eutHer13        Eutheria Apr. 24. 2006 (UCSC Recon/eutHer13) (eutHer13)
98euaGli13        Euarchontoglires Apr. 24. 2006 (UCSC Recon/euaGli13) (euaGli13)
99catArr1 Catarrhini June 13. 2006 (UCSC Recon/catArr1) (catArr1)
100afrOth13        Afrotheria Apr. 24. 2006 (UCSC Recon/afrOth13) (afrOth13)
101braFlo1 Lancelet Mar. 2006 (JGI 1.0/braFlo1) (braFlo1)
102ci2     C. intestinalis Mar. 2005 (JGI 2.1/ci2) (ci2)
103ci1     C. intestinalis Dec. 2002 (JGI 1.0/ci1) (ci1)
104cioSav2 C. savignyi July 2005 (Sidow Lab 2.0/cioSav2) (cioSav2)
105cioSav1 C. savignyi Apr. 2003 (Broad/cioSav1) (cioSav1)
106strPur2 S. purpuratus Sep. 2006 (Baylor 2.1/strPur2) (strPur2)
107strPur1 S. purpuratus Apr. 2005 (Baylor 1.1/strPur1) (strPur1)
108ce8     C. elegans Jun 2009 (WS204/ce8) (ce8)
109ce7     C. elegans Feb 2009 (WS200/ce7) (ce7)
110aplCal1 Sea hare Sept. 2008 (Broad 2.0/aplCal1) (aplCal1)
111ce6     C. elegans May 2008 (WS190/ce6) (ce6)
112ce5     C. elegans Aug. 2007 (WS180/ce5) (ce5)
113ce4     C. elegans Jan. 2007 (WS170/ce4) (ce4)
114ce3     C. elegans March 2005 (WS140/ce3) (ce3)
115ce2     C. elegans Mar. 2004 (WS120/ce2) (ce2)
116caePb2  C. brenneri Feb. 2008 (WUGSC 6.0.1/caePb2) (caePb2)
117caePb1  C. brenneri Jan. 2007 (WUGSC 4.0/caePb1) (caePb1)
118cb3     C. briggsae Jan. 2007 (WUGSC 1.0/cb3) (cb3)
119cb2     C. briggsae Aug 2005 (WUGSC prelim/cb2) (cb2)
120cb1     C. briggsae July 2002 (WormBase cb25.agp8/cb1) (cb1)
121caeRem3 C. remanei May 2007 (WUGSC 15.0.1/caeRem3) (caeRem3)
122caeRem2 C. remanei Mar. 2006 (WUGSC 1.0/caeRem2) (caeRem2)
123caeRem1 C. remanei March 2005 (WUGSC prelim/caeRem1) (caeRem1)
124caeJap2 C. japonica Jan. 2009 (WUGSC 4.0.1/caeJap2) (caeJap2)
125caeJap1 C. japonica Mar. 2008 (WUGSC 3.0.2/caeJap1) (caeJap1)
126priPac1 P. pacificus Feb. 2007 (WUGSC 5.0/priPac1) (priPac1)
127dm3     D. melanogaster Apr. 2006 (BDGP R5/dm3) (dm3)
128dm2     D. melanogaster Apr. 2004 (BDGP R4/dm2) (dm2)
129dm1     D. melanogaster Jan. 2003 (BDGP R3/dm1) (dm1)
130droSim1 D. simulans Apr. 2005 (WUGSC mosaic 1.0/droSim1) (droSim1)
131droSec1 D. sechellia Oct. 2005 (Broad/droSec1) (droSec1)
132droYak2 D. yakuba Nov. 2005 (WUGSC 7.1/droYak2) (droYak2)
133droYak1 D. yakuba Apr. 2004 (WUGSC 1.0/droYak1) (droYak1)
134droEre1 D. erecta Aug. 2005 (Agencourt prelim/droEre1) (droEre1)
135droAna2 D. ananassae Aug. 2005 (Agencourt prelim/droAna2) (droAna2)
136droAna1 D. ananassae July 2004 (TIGR/droAna1) (droAna1)
137dp3     D. pseudoobscura Nov. 2004 (FlyBase 1.03/dp3) (dp3)
138dp2     D. pseudoobscura Aug. 2003 (Baylor freeze1/dp2) (dp2)
139droPer1 D. persimilis Oct. 2005 (Broad/droPer1) (droPer1)
140droVir2 D. virilis Aug. 2005 (Agencourt prelim/droVir2) (droVir2)
141droVir1 D. virilis July 2004 (Agencourt prelim/droVir1) (droVir1)
142droMoj2 D. mojavensis Aug. 2005 (Agencourt prelim/droMoj2) (droMoj2)
143droMoj1 D. mojavensis Aug. 2004 (Agencourt prelim/droMoj1) (droMoj1)
144droGri1 D. grimshawi Aug. 2005 (Agencourt prelim/droGri1) (droGri1)
145anoGam1 A. gambiae Feb. 2003 (IAGEC MOZ2/anoGam1) (anoGam1)
146apiMel2 A. mellifera Jan. 2005 (Baylor 2.0/apiMel2) (apiMel2)
147apiMel1 A. mellifera July 2004 (Baylor 1.2/apiMel1) (apiMel1)
148triCas2 T. castaneum Sep. 2005 (Baylor 2.0/triCas2) (triCas2)
149falciparum      P. falciparum Plasmodium falciparum (?/falciparum) (falciparum)
150sacCer2 S. cerevisiae June 2008 (SGD/sacCer2) (sacCer2)
151sacCer1 S. cerevisiae Oct. 2003 (SGD/sacCer1) (sacCer1)
152sc1     SARS coronavirus Apr. 2003 (GenBank Apr. 14 '03/sc1) (sc1)
Note: リポジトリブラウザについてのヘルプは TracBrowser を参照してください。