root/galaxy-central/tool-data/sift_db.loc.sample

リビジョン 2, 0.9 KB (コミッタ: hatakeyama, 15 年 前)

import galaxy-central
行番号 
1#This is a sample file distributed with Galaxy that enables tools to use
2#a directory of sqlite files for use with SIFT.  You will need to supply
3#these files and then create a sift_db.loc file similar to this one (store
4#it in this directory) that points to the directories in which those files
5#are stored.  The sift_db.loc file has this format (white space characters
6#are TAB characters):
7#
8#<build>        <file_path>
9#
10#So, for example, if your sift_db.loc began like this:
11#
12#hg18   /galaxy/data/hg18/misc/sift/Human_db_36
13#
14#then your /galaxy/data/hg18/misc/sift/Human_db_36 directory would need to
15#contain the following sqlite files, among others:
16#
17#-rw-r--r-- 1 g2test g2data 3010870272 Sep  2 14:09 Human_CHR10.sqlite
18#-rw-r--r-- 1 g2test g2data 2926365696 Sep  2 15:09 Human_CHR11.sqlite
19#-rw-r--r-- 1 g2test g2data 2557210624 Sep  2 14:19 Human_CHR12.sqlite
20#
21#hg18   /galaxy/data/hg18/misc/sift/Human_db_36
22#hg19   /galaxy/data/hg19/misc/sift/Human_db_37
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