root/galaxy-central/tools/data_source/bx_browser.xml

リビジョン 2, 2.4 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<?xml version="1.0"?>
2<!--
3    If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
4    the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
5    initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
6-->
7<tool name="BX main" id="bx_browser" tool_type="data_source">
8    <description>browser</description>
9    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
10    <inputs action="http://main.genome-browser.bx.psu.edu/cgi-bin/hgTables" check_values="false" method="get">
11        <display>go to BX Browser $GALAXY_URL</display>
12        <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
13        <param name="tool_id" type="hidden" value="bx_browser" />
14        <param name="sendToGalaxy" type="hidden" value="1" />
15        <param name="hgta_compressType" type="hidden" value="none" />
16        <param name="hgta_outputType" type="hidden" value="bed" />
17    </inputs>
18    <request_param_translation>
19        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
20        <request_param galaxy_name="URL" remote_name="URL" missing="" />
21        <request_param galaxy_name="dbkey" remote_name="db" missing="?" />
22        <request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
23        <request_param galaxy_name="table" remote_name="hgta_table" missing="unknown table" />
24        <request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" />
25        <request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="tabular" >
26            <value_translation>
27                <value galaxy_value="tabular" remote_value="primaryTable" />
28                <value galaxy_value="tabular" remote_value="selectedFields" />
29                <value galaxy_value="wig" remote_value="wigData" />
30                <value galaxy_value="interval" remote_value="tab" />
31                <value galaxy_value="html" remote_value="hyperlinks" />
32                <value galaxy_value="fasta" remote_value="sequence" />
33            </value_translation>
34        </request_param>
35    </request_param_translation>
36    <uihints minwidth="800"/>
37    <outputs>
38        <data name="output" format="tabular" />
39    </outputs>
40    <options sanitize="False" refresh="True"/>
41</tool>
Note: リポジトリブラウザについてのヘルプは TracBrowser を参照してください。