root/galaxy-central/tools/data_source/eupathdb.xml

リビジョン 2, 1.8 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<!--
2    If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
3    the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
4    initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
5-->
6<tool name="EuPathDB" id="eupathdb" tool_type="data_source">
7    <description>server</description>
8    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
9    <inputs action="http://eupathdb.org/eupathdb/queries_tools.jsp" check_values="false" method="post">
10        <display>go to EuPathDB server $GALAXY_URL</display>
11        <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=eupathdb" />
12    </inputs>
13    <request_param_translation>
14        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
15        <request_param galaxy_name="URL" remote_name="URL" missing="">
16            <append_param separator="&amp;" first_separator="?" join="=">
17                <value name="dbkey" missing="?" />
18                <value name="wdk_history_id" missing="" />
19                <value name="wdkReportFormat" missing="tabular" />
20                <value name="selectedFields" missing="" />
21                <value name="includeHeader" missing="yes" />
22                <value name="downloadType" missing="plain" />
23            </append_param>
24        </request_param>
25        <request_param galaxy_name="format" remote_name="wdkReportFormat" missing="tabular" />
26        <request_param galaxy_name="dbkey" remote_name="dbkey" missing="?" />
27    </request_param_translation>
28    <uihints minwidth="800"/>
29    <outputs>
30        <data name="output" format="txt" />
31    </outputs>
32    <options sanitize="False" refresh="True"/>
33</tool>
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