root/galaxy-central/tools/data_source/flymine.xml

リビジョン 2, 1.7 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<?xml version="1.0"?>
2<!--
3    If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
4    the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
5    initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
6-->
7<tool name="Flymine" id="flymine" tool_type="data_source">
8    <description>server</description>
9    <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
10    <inputs action="http://www.flymine.org" check_values="false" method="get" target="_top">
11        <display>go to Flymine server $GALAXY_URL</display>
12        <param name="GALAXY_URL" type="baseurl" value="/tool_runner?tool_id=flymine" />
13    </inputs>
14    <request_param_translation>
15        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
16        <request_param galaxy_name="URL" remote_name="URL" missing="" />
17        <request_param galaxy_name="dbkey" remote_name="db" missing="?" />
18        <request_param galaxy_name="organism" remote_name="organism" missing="" />
19        <request_param galaxy_name="table" remote_name="table" missing="" />
20        <request_param galaxy_name="description" remote_name="description" missing="" />
21        <request_param galaxy_name="name" remote_name="name" missing="FlyMine query" />
22        <request_param galaxy_name="info" remote_name="info" missing="" />
23        <request_param galaxy_name="data_type" remote_name="data_type" missing="txt" />
24    </request_param_translation>
25    <uihints minwidth="800"/>
26    <outputs>
27        <data name="output" format="txt" />
28    </outputs>
29    <options sanitize="False" refresh="True"/>
30</tool>
31
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