| 1 | <tool id="genbank" name="Connect to Genbank">
|
|---|
| 2 | <!-- <description>queries genbank</description> -->
|
|---|
| 3 | <command interpreter="python">genbank.py $mode "$text" $output</command>
|
|---|
| 4 | <inputs>
|
|---|
| 5 | <param name="mode" type="select">
|
|---|
| 6 | <option value="nucleotide">nucleotide database</option>
|
|---|
| 7 | <option value="protein">proteins database</option>
|
|---|
| 8 | <label>Get sequences from the</label>
|
|---|
| 9 | </param>
|
|---|
| 10 | <param name="text" size="40" type="text" value="6273291">
|
|---|
| 11 | <label>with accession ID</label>
|
|---|
| 12 | </param>
|
|---|
| 13 | </inputs>
|
|---|
| 14 | <outputs>
|
|---|
| 15 | <data format="fasta" name="output" />
|
|---|
| 16 | </outputs>
|
|---|
| 17 | <help>
|
|---|
| 18 | At the moment this tool allows the following simple searches:
|
|---|
| 19 |
|
|---|
| 20 | - by GI: **51594135**
|
|---|
| 21 | - by accession: **CF622840**
|
|---|
| 22 | - using text: **human hbb1** (this feature is experimental)
|
|---|
| 23 | </help>
|
|---|
| 24 |
|
|---|
| 25 | </tool> |
|---|