root/galaxy-central/tools/data_source/ucsc_tablebrowser.xml

<?xml version="1.0"?>
<!--
    If the value of 'URL_method' is 'get', the request will consist of the value of 'URL' coming back in
    the initial response.  If value of 'URL_method' is 'post', any additional params coming back in the
    initial response ( in addition to 'URL' ) will be encoded and appended to URL and a post will be performed.
-->
<tool name="UCSC Main" id="ucsc_table_direct1" tool_type="data_source">
        <description>table browser</description>
        <command interpreter="python">data_source.py $output $__app__.config.output_size_limit</command>
        <inputs action="http://genome.ucsc.edu/cgi-bin/hgTables" check_values="false" method="get">
                <display>go to UCSC Table Browser $GALAXY_URL</display>
                <param name="GALAXY_URL" type="baseurl" value="/tool_runner" />
                <param name="tool_id" type="hidden" value="ucsc_table_direct1" />
                <param name="sendToGalaxy" type="hidden" value="1" />
                <param name="hgta_compressType" type="hidden" value="none" />
                <param name="hgta_outputType" type="hidden" value="bed" />
        </inputs>
        <request_param_translation>
        <request_param galaxy_name="URL_method" remote_name="URL_method" missing="post" />
        <request_param galaxy_name="URL" remote_name="URL" missing="" />
        <request_param galaxy_name="dbkey" remote_name="db" missing="?" />
        <request_param galaxy_name="organism" remote_name="org" missing="unknown species" />
            <request_param galaxy_name="table" remote_name="hgta_table" missing="unknown table" />
            <request_param galaxy_name="description" remote_name="hgta_regionType" missing="no description" />
            <request_param galaxy_name="data_type" remote_name="hgta_outputType" missing="tabular" >
            <value_translation>
                <value galaxy_value="tabular" remote_value="primaryTable" />
                <value galaxy_value="tabular" remote_value="selectedFields" />
                <value galaxy_value="wig" remote_value="wigData" />
                <value galaxy_value="interval" remote_value="tab" />
                <value galaxy_value="html" remote_value="hyperlinks" />
                <value galaxy_value="fasta" remote_value="sequence" />
                <value galaxy_value="gtf" remote_value="gff" />
            </value_translation>
        </request_param>
        </request_param_translation>
        <uihints minwidth="800"/>
        <outputs>
                <data name="output" format="tabular" />
        </outputs>
        <options sanitize="False" refresh="True"/>
</tool>