root/galaxy-central/tools/emboss_5/emboss_cpgplot.xml

リビジョン 2, 1.4 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="EMBOSS: cpgplot15" name="cpgplot" version="5.0.0">
2  <description>Plot CpG rich areas</description>
3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4  <command interpreter="perl">emboss_cpgplot_wrapper.pl cpgplot -sequence $input1 -window $window -minlen $minlen -minpc $minpc -outfile $outfile -graph png -goutfile $goutfile -outfeat $outfeat -minoe $minoe -auto</command>
5  <inputs>
6    <param format="data" name="input1" type="data">
7      <label>On query</label>
8    </param>
9    <param name="window" size="4" type="integer" value="100">
10      <label>Window Size</label>
11    </param>
12    <param name="minlen" size="4" type="integer" value="200">
13      <label>Minimum length</label>
14    </param>
15    <param name="minoe" size="4" type="float" value="0.6">
16      <label>Minimum average observed to expected ratio</label>
17    </param>
18    <param name="minpc" size="4" type="float" value="50.0">
19      <label>Minimum average percentage of G plus C</label>
20    </param>
21  </inputs>
22  <outputs>
23    <data format="cpgplot" name="outfile" />
24    <data format="png" name="goutfile" />
25    <data format="gff" name="outfeat" />
26  </outputs>
27  <code file="emboss_format_corrector.py" />
28  <help>
29    You can view the original documentation here_.
30   
31    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cpgplot.html
32  </help>
33</tool>
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