root/galaxy-central/tools/emboss_5/emboss_dotpath.xml

リビジョン 2, 1.5 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="EMBOSS: dotpath25" name="dotpath" version="5.0.0">
2  <description>Non-overlapping wordmatch dotplot of two sequences</description>
3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4  <command interpreter="perl">emboss_single_outputfile_wrapper.pl dotpath -asequence $input1 -bsequence $input2 -goutfile $out_file1 -wordsize $wordsize -overlaps $overlaps -boxit $boxit -graph png
5  -auto</command>
6  <inputs>
7    <param format="data" name="input1" type="data">
8      <label>Sequence 1</label>
9    </param>
10    <param format="data" name="input2" type="data">
11      <label>Sequence 2</label>
12    </param>
13    <param name="wordsize" size="4" type="text" value="4">
14      <label>Word size (Integer 2 or more)</label>
15    </param>
16    <param name="overlaps" type="select">
17      <label>Display the overlapping matches (in red) as well as the minimal set of non-overlapping matches</label>
18      <option value="no">No</option>
19      <option value="yes">Yes</option>
20    </param>
21    <param name="boxit" type="select">
22      <label>Draw a box around dotplot</label>
23      <option value="yes">Yes</option>
24      <option value="no">No</option>
25    </param>
26  </inputs>
27  <outputs>
28    <data format="png" name="out_file1" />
29  </outputs>
30  <!-- functional tests not possible since image output contains file name information and timestamp -->
31  <help>
32    You can view the original documentation here_.
33   
34    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/dotpath.html
35  </help>
36</tool>
Note: リポジトリブラウザについてのヘルプは TracBrowser を参照してください。