root/galaxy-central/tools/emboss_5/emboss_dottup.xml

リビジョン 2, 1.3 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="EMBOSS: dottup26" name="dottup" version="5.0.0">
2  <description>Displays a wordmatch dotplot of two sequences</description>
3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4  <command interpreter="perl">emboss_single_outputfile_wrapper.pl dottup -asequence $input1 -bsequence $input2 -goutfile $out_file1 -wordsize $wordsize -boxit $boxit -graph png  -xygraph png -auto</command>
5  <inputs>
6    <param format="data" name="input1" type="data">
7      <label>Sequence 1</label>
8    </param>
9    <param format="data" name="input2" type="data">
10      <label>Sequence 2</label>
11    </param>
12    <param name="wordsize" size="4" type="text" value="4">
13      <label>Word size</label>
14    </param>
15    <param name="boxit" type="select">
16      <label>Draw a box around dotplot</label>
17      <option value="yes">Yes</option>
18      <option value="no">No</option>
19    </param>
20  </inputs>
21  <outputs>
22    <data format="png" name="out_file1" />
23  </outputs>
24  <!-- functional tests not possible since image output contains file name information and timestamp -->
25  <help>
26    You can view the original documentation here_.
27   
28    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/dottup.html
29  </help>
30</tool>
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