root/galaxy-central/tools/emboss_5/emboss_dreg.xml

リビジョン 2, 0.9 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="EMBOSS: dreg27" name="dreg" version="5.0.0">
2  <description>Regular expression search of a nucleotide sequence</description>
3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4  <command>dreg -sequence $input1 -outfile $out_file1 -pattern "$pattern" -raccshow3 "no" -rusashow3 "no" -rdesshow3 "no" -auto</command>
5  <inputs>
6    <param format="data" name="input1" type="data">
7      <label>Sequence 1</label>
8    </param>
9    <param name="pattern" size="50" type="text" value="(AUG)">
10      <label>Regular expression pattern</label>
11    </param>
12  </inputs>
13  <outputs>
14    <data format="dreg" name="out_file1" />
15  </outputs>
16  <!-- tests not possible since dreg timestamps output file --> 
17  <help>
18    You can view the original documentation here_.
19   
20    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/dreg.html
21  </help>
22</tool>
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