1 | <tool id="EMBOSS: infoseq46" name="infoseq" version="5.0.0">
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2 | <!-- info contains file information always --> |
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3 | <description>Displays some simple information about sequences</description>
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4 | <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
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5 | <command>infoseq -sequence $input1 -outfile $out_file1 -html $html_out1 -heading $heading -usa $usa -name $disname -accession $accession -gi $gi -version $version -type $type -length $length -pgc
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6 | $pgc -description $description -auto</command>
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7 | <inputs>
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8 | <param format="data" name="input1" type="data">
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9 | <label>Sequences</label>
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10 | </param>
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11 | <param name="html_out1" type="select">
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12 | <label>Format output as an HTML table</label>
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13 | <option value="no">No</option>
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14 | <option value="yes">Yes</option>
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15 | </param>
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16 | <param name="heading" type="select">
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17 | <label>Display column headings</label>
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18 | <option value="yes">Yes</option>
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19 | <option value="no">No</option>
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20 | </param>
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21 | <param name="usa" type="select">
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22 | <label>Display the USA of the sequence</label>
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23 | <option value="yes">Yes</option>
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24 | <option value="no">No</option>
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25 | </param>
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26 | <param name="disname" type="select">
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27 | <label>Display 'name' column</label>
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28 | <option value="yes">Yes</option>
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29 | <option value="no">No</option>
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30 | </param>
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31 | <param name="accession" type="select">
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32 | <label>Display 'accession' column</label>
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33 | <option value="yes">Yes</option>
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34 | <option value="no">No</option>
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35 | </param>
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36 | <param name="gi" type="select">
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37 | <label>Display 'GI' column</label>
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38 | <option value="no">No</option>
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39 | <option value="yes">Yes</option>
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40 | </param>
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41 | <param name="version" type="select">
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42 | <label>Display 'version' column</label>
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43 | <option value="no">No</option>
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44 | <option value="yes">Yes</option>
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45 | </param>
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46 | <param name="type" type="select">
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47 | <label>Display 'type' column</label>
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48 | <option value="yes">Yes</option>
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49 | <option value="no">No</option>
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50 | </param>
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51 | <param name="length" type="select">
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52 | <label>Display 'length' column</label>
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53 | <option value="yes">Yes</option>
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54 | <option value="no">No</option>
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55 | </param>
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56 | <param name="pgc" type="select">
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57 | <label>Display 'percent GC content' column</label>
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58 | <option value="yes">Yes</option>
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59 | <option value="no">No</option>
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60 | </param>
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61 | <param name="description" type="select">
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62 | <label>Display 'description' column</label>
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63 | <option value="yes">Yes</option>
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64 | <option value="no">No</option>
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65 | </param>
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66 | </inputs>
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67 | <outputs>
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68 | <data format="txt" name="out_file1" />
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69 | </outputs>
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70 | <code file="emboss_format_corrector.py" />
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71 | <help> |
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72 | You can view the original documentation here_. |
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73 | |
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74 | .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/infoseq.html |
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75 | </help> |
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76 | </tool> |
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