root/galaxy-central/tools/emboss_5/emboss_marscan.xml

リビジョン 2, 1.8 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="EMBOSS: marscan49" name="marscan" version="5.0.0">
2  <description>Finds MAR/SAR sites in nucleic sequences</description>
3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4  <command>marscan -sequence $input1 -outfile $out_file1 -rformat2 $out_format1 -auto</command>
5  <inputs>
6    <param format="data" name="input1" type="data">
7      <label>Sequence</label>
8    </param>
9    <param name="out_format1" type="select">
10      <label>Output Report File Format</label>
11      <option value="gff">GFF</option>
12      <option value="embl">EMBL</option>
13      <option value="genbank">GENBANK</option>
14      <option value="pir">PIR</option>
15      <option value="swiss">SwissProt</option>
16      <option value="dbmotif">DbMotif</option>
17      <option value="diffseq">Diffseq</option>
18      <option value="excel">Excel (tab delimited)</option>
19      <option value="feattable">FeatTable</option>
20      <option value="motif">Motif</option>
21      <option value="regions">Regions</option>
22      <option value="seqtable">SeqTable</option>
23      <option value="simple">SRS Simple</option>
24      <option value="srs">SRS</option>
25      <option value="table">Table</option>
26      <option value="tagseq">TagSeq</option>
27    </param>
28  </inputs>
29  <outputs>
30    <data format="gff" name="out_file1" />
31  </outputs>
32  <tests>
33    <test>
34      <param name="input1" value="1.fasta"/>
35      <param name="out_format1" value="excel"/>
36      <output name="out_file1" file="emboss_marscan_out.tabular"/>
37    </test>
38  </tests>
39  <code file="emboss_format_corrector.py" />
40  <help>
41    You can view the original documentation here_.
42   
43    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/marscan.html
44  </help>
45</tool>
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