root/galaxy-central/tools/emboss_5/emboss_plotorf.xml @ 2

<tool id="EMBOSS: plotorf76" name="plotorf" version="5.0.0">
  <!-- produces png file output -->
  <description>Plot potential open reading frames</description>
  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
  <command interpreter="perl">emboss_single_outputfile_wrapper.pl plotorf -sequence $input1 -graph png -goutfile $out_file1 -start $start -stop $stop -auto</command>
  <inputs>
    <param format="fasta" name="input1" type="data">
      <label>Sequence</label>
    </param>
    <param name="start" size="15" type="text" value="ATG">
      <label>Start codons</label>
    </param>
    <param name="stop" size="15" type="text" value="TAA">
      <label>Stop codons</label>
    </param>
  </inputs>
  <outputs>
    <data format="png" name="out_file1" />
  </outputs>
  <!--  <tests>
    <test>
      <param name="input1" value="2.fasta"/>
      <param name="start" value="ATG"/>
      <param name="stop" value="TAA"/>
      <output name="out_file1" file="emboss_plotorf_out.png"/>
    </test>
  </tests> -->
  <help>

.. class:: warningmark

The input dataset needs to be sequences.

-----

    You can view the original documentation here_.
    
    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/plotorf.html
  </help>
</tool>