root/galaxy-central/tools/emboss_5/emboss_primersearch.xml

リビジョン 2, 1.2 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="EMBOSS: primersearch81" name="primersearch" version="5.0.0">
2  <description>Searches DNA sequences for matches with primer pairs</description>
3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4  <command>primersearch -seqall $input1 -infile $input2 -outfile $out_file1 -mismatchpercent $mismatchpercent -auto</command>
5  <inputs>
6    <param format="fasta" name="input1" type="data">
7      <label>Main sequences</label>
8    </param>
9    <param format="data" name="input2" type="data">
10      <label>Primer file</label>
11    </param>
12    <param name="mismatchpercent" size="4" type="text" value="0">
13      <label>Allowed percent mismatch</label>
14    </param>
15  </inputs>
16  <outputs>
17    <data format="primersearch" name="out_file1" />
18  </outputs>
19  <tests>
20    <test>
21      <param name="input1" value="2.fasta"/>
22      <param name="input2" value="emboss_primersearch.fasta"/>
23      <param name="mismatchpercent" value="0"/>
24      <output name="out_file1" file="emboss_primersearch_out.primersearch"/>
25    </test>
26  </tests>
27  <help>
28
29    You can view the original documentation here_.
30   
31    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/primersearch.html
32  </help>
33</tool>
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