root/galaxy-central/tools/emboss_5/emboss_tcode.xml @ 3

リビジョン 2, 1.8 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="EMBOSS: tcode97" name="tcode" version="5.0.0">
2  <description>Fickett TESTCODE statistic to identify protein-coding DNA</description>
3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4  <command>tcode -sequence $input1 -outfile $out_file1 -window "$window" -step "$step" -rformat $out_format1 -auto</command>
5  <inputs>
6    <param format="data" name="input1" type="data">
7      <label>Sequence</label>
8    </param>
9    <param name="window" size="5" type="text" value="200">
10      <label>Window size</label>
11    </param>
12    <param name="step" size="5" type="text" value="3">
13      <label>Step size</label>
14    </param>
15    <param name="out_format1" type="select">
16      <label>Output Report File Format</label>
17      <option value="table">Table</option>
18      <option value="embl">EMBL</option>
19      <option value="genbank">GENBANK</option>
20      <option value="gff">GFF</option>
21      <option value="pir">PIR</option>
22      <option value="swiss">SwissProt</option>
23      <option value="dbmotif">DbMotif</option>
24      <option value="diffseq">Diffseq</option>
25      <option value="excel">Excel (tab delimited)</option>
26      <option value="feattable">FeatTable</option>
27      <option value="motif">Motif</option>
28      <option value="regions">Regions</option>
29      <option value="seqtable">SeqTable</option>
30      <option value="simple">SRS Simple</option>
31      <option value="srs">SRS</option>
32      <option value="tagseq">TagSeq</option>
33    </param>
34  </inputs>
35  <outputs>
36    <data format="table" name="out_file1" />
37  </outputs>
38  <code file="emboss_format_corrector.py" />
39  <help>
40    You can view the original documentation here_.
41   
42    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/tcode.html
43  </help>
44</tool>
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