root/galaxy-central/tools/emboss_5/emboss_wobble.xml

リビジョン 2, 1.3 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="EMBOSS: wobble108" name="wobble" version="5.0.0">
2  <description>Wobble base plot</description>
3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4  <command interpreter="perl">emboss_single_outputfile_wrapper.pl wobble -sequence $input1 -graph png -goutfile $ofile1 -outfile $ofile2 -window "$window" -bases "$bases" -auto</command>
5  <inputs>
6    <param format="fasta" name="input1" type="data">
7      <label>Sequence</label>
8    </param>
9    <param name="window" size="5" type="text" value="30">
10      <label>Window size, in codons</label>
11    </param>
12    <param name="bases" size="6" type="text" value="GC">
13      <label>Bases used</label>
14    </param>
15  </inputs>
16  <outputs>
17    <data format="png" name="ofile1" />
18    <data format="wobble" name="ofile2" />
19  </outputs>
20  <tests>
21    <test>
22      <param name="input1" value="2.fasta"/>
23      <param name="window" value="30"/>
24      <param name="bases" value="GC"/>
25      <output name="ofile2" file="emboss_wobble_out.wobble"/>
26    </test>
27  </tests>
28  <help>
29
30.. class:: warningmark
31
32The input dataset needs to be sequences.
33
34-----
35
36    You can view the original documentation here_.
37   
38    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/wobble.html
39  </help>
40</tool>
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