root/galaxy-central/tools/emboss_5/emboss_wordcount.xml @ 3

リビジョン 2, 1.1 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="EMBOSS: wordcount109" name="wordcount" version="5.0.0">
2  <description>Counts words of a specified size in a DNA sequence</description>
3  <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4  <command>wordcount -sequence $input1 -outfile $out_file1 -wordsize "$wordsize" -auto</command>
5  <inputs>
6    <param format="fasta" name="input1" type="data">
7      <label>Sequence</label>
8    </param>
9    <param name="wordsize" size="5" type="text" value="4">
10      <label>Word size</label>
11    </param>
12  </inputs>
13  <outputs>
14    <data format="wordcount" name="out_file1" />
15  </outputs>
16  <tests>
17    <test>
18      <param name="input1" value="2.fasta"/>
19      <param name="wordsize" value="4"/>
20      <output name="out_file1" file="emboss_wordcount_out.wordcount"/>
21    </test>
22  </tests>
23  <help>
24
25.. class:: warningmark
26
27The input dataset needs to be sequences.
28
29-----
30
31    You can view the original documentation here_.
32   
33    .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/wordcount.html
34  </help>
35</tool>
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