root/galaxy-central/tools/fastq/fastq_to_tabular.xml

<tool id="fastq_to_tabular" name="FASTQ to Tabular" version="1.0.0">
  <description>converter</description>
  <command interpreter="python">fastq_to_tabular.py '$input_file' '$output_file' '${input_file.extension[len( 'fastq' ):]}'</command>
  <inputs>
    <param name="input_file" type="data" format="fastqsanger,fastqcssanger,fastqillumina,fastqsolexa" label="FASTQ file to convert" />
  </inputs>
  <outputs>
    <data name="output_file" format="tabular" />
  </outputs>
  <tests>
    <!-- basic test -->
    <test>
      <param name="input_file" value="sanger_full_range_original_sanger.fastqsanger" ftype="fastqsanger" />
      <output name="output_file" file="fastq_to_tabular_out_1.tabular" />
    </test>
    <!-- color space test -->
    <test>
      <param name="input_file" value="sanger_full_range_as_cssanger.fastqcssanger" ftype="fastqcssanger" />
      <output name="output_file" file="fastq_to_tabular_out_2.tabular" />
    </test>
  </tests>
  <help>
**What it does**

This tool converts FASTQ sequencing reads to a Tabular file.

Tab characters, if present in the source FASTQ file, will be converted to spaces.

  </help>
</tool>