root/galaxy-central/tools/filters/condense_characters.xml

リビジョン 2, 1.3 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="Condense characters1" name="Condense">
2  <description>consecutive characters</description>
3  <command interpreter="perl">condense_characters.pl $input $character $out_file1</command>
4  <inputs>
5<!--    <display>condense all consecutive $character from $input</display> -->
6    <param name="character" type="select" label="Condense all consecutive">
7      <option value="T">Tabs</option>
8      <option value="Sp">Spaces</option>
9      <option value="Dt">Dots</option>
10      <option value="C">Commas</option>
11      <option value="D">Dashes</option>
12      <option value="U">Underscores</option>
13      <option value="P">Pipes</option>
14    </param>
15    <param format="txt" name="input" type="data" label="in this Query"/>
16  </inputs>
17  <outputs>
18    <data format="input" name="out_file1" metadata_source="input" />
19  </outputs>
20  <tests>
21    <test>
22      <param name="character" value="T"/>
23      <param name="input" value="1.bed"/>
24      <output name="out_file1" file="eq-condense.dat"/>
25    </test>
26  </tests>
27  <help>
28
29**What it does**
30
31This tool condenses all consecutive characters of a specified type.
32
33-----
34
35**Example**
36
37- Input file::
38
39    geneX,,,10,,,,,20
40    geneY,,5,,,,,12,15,9,
41
42- Condense all consecutive commas. The above file will be converted into::
43
44    geneX,10,20
45    geneY,5,12,15,9
46
47</help>
48</tool>
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