1 | <tool id="addValue" name="Add column"> |
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2 | <description>to an existing query</description> |
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3 | <command interpreter="perl">fixedValueColumn.pl $input $out_file1 "$exp" $iterate</command> |
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4 | <inputs> |
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5 | <param name="exp" size="20" type="text" value="1" label="Add this value"/> |
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6 | <param format="tabular" name="input" type="data" label="to Query" help="Query missing? See TIP below" /> |
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7 | <param name="iterate" type="select" label="Iterate?"> |
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8 | <option value="no">NO</option> |
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9 | <option value="yes">YES</option> |
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10 | </param> |
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11 | </inputs> |
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12 | <outputs> |
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13 | <data format="input" name="out_file1" metadata_source="input"/> |
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14 | </outputs> |
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15 | <tests> |
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16 | <test> |
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17 | <param name="exp" value="1"/> |
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18 | <param name="input" value="1.bed"/> |
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19 | <param name="iterate" value="no"/> |
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20 | <output name="out_file1" file="eq-addvalue.dat"/> |
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21 | </test> |
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22 | </tests> |
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23 | <help> |
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24 | |
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25 | .. class:: infomark |
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26 | |
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27 | **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* |
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28 | |
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29 | ----- |
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30 | |
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31 | **What it does** |
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32 | |
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33 | You can enter any value and it will be added as a new column to your Query |
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34 | |
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35 | ----- |
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36 | |
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37 | **Example** |
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38 | |
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39 | If you original data looks like this:: |
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40 | |
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41 | chr1 10 100 geneA |
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42 | chr2 200 300 geneB |
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43 | chr2 400 500 geneC |
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44 | |
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45 | Typing **+** in the text box will generate:: |
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46 | |
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47 | chr1 10 100 geneA + |
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48 | chr2 200 300 geneB + |
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49 | chr2 400 500 geneC + |
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50 | |
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51 | |
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52 | You can also add line numbers by selecting **Iterate: YES**. In this case if you enter **1** in the text box you will get:: |
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53 | |
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54 | chr1 10 100 geneA 1 |
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55 | chr2 200 300 geneB 2 |
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56 | chr2 400 500 geneC 3 |
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57 | |
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58 | |
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59 | |
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60 | </help> |
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61 | </tool> |
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