1 | <tool id="mergeCols1" name="Merge Columns" version="1.0.1"> |
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2 | <description>together</description> |
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3 | <command interpreter="python"> |
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4 | mergeCols.py |
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5 | $input1 |
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6 | $out_file1 |
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7 | $col1 |
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8 | $col2 |
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9 | #for $col in $columns |
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10 | ${col.datacol} |
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11 | #end for |
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12 | </command> |
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13 | <inputs> |
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14 | <param format="tabular" name="input1" type="data" label="Select data" help="Query missing? See TIP below."/> |
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15 | <param name="col1" label="Merge column" type="data_column" data_ref="input1" /> |
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16 | <param name="col2" label="with column" type="data_column" data_ref="input1" help="Need to add more columns? Use controls below."/> |
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17 | <repeat name="columns" title="Columns"> |
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18 | <param name="datacol" label="Add column" type="data_column" data_ref="input1" /> |
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19 | </repeat> |
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20 | </inputs> |
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21 | <outputs> |
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22 | <data format="tabular" name="out_file1" /> |
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23 | </outputs> |
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24 | <tests>
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25 | <test>
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26 | <param name="input1" value="1.bed"/> |
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27 | <param name="col1" value="4" /> |
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28 | <param name="col2" value="1" /> |
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29 | <param name="datacol" value="6" />
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30 | <output name="out_file1" file="mergeCols.dat"/>
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31 | </test>
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32 | </tests>
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33 | <help> |
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34 | |
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35 | .. class:: infomark |
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36 | |
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37 | **TIP:** If your data is not TAB delimited, use *Text Manipulation->Convert* |
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38 | |
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39 | ----- |
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40 | |
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41 | **What it does**
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42 |
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43 | This tool merges columns together. Any number of valid columns can be merged in any order.
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44 |
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45 | -----
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46 |
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47 | **Example**
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48 |
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49 | Input dataset (five columns: c1, c2, c3, c4, and c5)::
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50 |
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51 | 1 10 1000 gene1 chr
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52 | 2 100 1500 gene2 chr
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53 |
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54 | merging columns "**c5,c1**" will return::
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55 |
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56 | 1 10 1000 gene1 chr chr1
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57 | 2 100 1500 gene2 chr chr2
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58 |
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59 | .. class:: warningmark |
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60 |
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61 | Note that all original columns are preserved and the result of merge is added as the rightmost column. |
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62 | </help> |
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63 | </tool> |
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