root/galaxy-central/tools/new_operations/tables_arithmetic_operations.xml

リビジョン 2, 3.3 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="tables_arithmetic_operations" name="Arithmetic Operations " version="1.0.0">
2  <description>on tables</description>
3 
4  <command interpreter="perl">
5        tables_arithmetic_operations.pl $inputFile1 $inputFile2 $inputArithmeticOperation3 $outputFile1
6  </command>
7
8  <inputs>
9        <param format="tabular" name="inputFile1" type="data" label="Select the first input tabular file"/>
10        <param format="tabular" name="inputFile2" type="data" label="Select the second input tabular file"/>
11       
12    <param name="inputArithmeticOperation3" type="select" label="Choose the arithmetic operation:">
13        <option value="Addition">Addition</option>
14        <option value="Subtraction">Subtraction</option>
15        <option value="Multiplication">Multiplication</option>
16        <option value="Division">Division</option>
17    </param>
18  </inputs>
19 
20  <outputs>
21    <data format="tabular" name="outputFile1"/>
22  </outputs>
23 
24  <tests>
25        <test>
26                <param name="inputFile1" value="numericalTable1.tabular" />
27                <param name="inputFile2" value="numericalTable1.tabular" />
28        <param name="inputArithmeticOperation3" value="Addition" />
29        <output name="outputFile1" file="table_addition_result.tabular" />
30        </test>
31       
32        <test>
33                <param name="inputFile1" value="numericalTable1.tabular" />
34                <param name="inputFile2" value="numericalTable1.tabular" />
35        <param name="inputArithmeticOperation3" value="Subtraction" />
36        <output name="outputFile1" file="table_subtraction_result.tabular" />
37        </test>
38       
39        <test>
40                <param name="inputFile1" value="numericalTable1.tabular" />
41                <param name="inputFile2" value="numericalTable1.tabular" />
42        <param name="inputArithmeticOperation3" value="Multiplication" />
43        <output name="outputFile1" file="table_multiplication_result.tabular" />
44        </test>
45       
46        <test>
47                <param name="inputFile1" value="numericalTable1.tabular" />
48                <param name="inputFile2" value="numericalTable1.tabular" />
49        <param name="inputArithmeticOperation3" value="Division" />
50        <output name="outputFile1" file="table_division_result.tabular" />
51        </test>
52       
53  </tests>
54 
55 
56  <help>
57
58.. class:: infomark
59
60**What it does**
61
62This program implements arithmetic operations on tabular files data. The program takes three inputs:
63
64- The first input is a TABULAR format file containing numbers only.
65- The second input is a TABULAR format file containing numbers only.
66- The third input is an arithmetic operation: +, -, x, or / for addition, subtraction, multiplication, or division, respectively.
67- The output file is a TABULAR format file containing the result of implementing the arithmetic operation on both input files.
68
69
70Notes:
71
72- The two files must have the same number of columns and the same number of rows.
73- The output file has the same number of columns and the same number of rows as each of the two input files.
74- In case of division, none of the values in the second input file could be 0, otherwise the program will stop and report an error.
75
76**Example**
77
78Let us have the first input file as follows::
79
80        5       4       0
81        10      11      12
82        1       3       1
83        1       2       1
84        2       0       4
85       
86And the second input file as follows::
87
88        5       4       4
89        2       5       8
90        1       2       1
91        3       2       5
92        2       4       4
93
94Running the program and choosing "Addition" as an arithmetic operation will give the following output::
95
96        10      8       4
97        12      16      20
98        2       5       2
99        4       4       6
100        4       4       8
101
102
103  </help> 
104 
105</tool>
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