root/galaxy-central/tools/regVariation/substitutions.xml

リビジョン 2, 0.8 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="substitutions1" name="Fetch substitutions " version="1.0.0">
2  <description> from pairwise alignments</description>
3  <command interpreter="python">
4        substitutions.py
5        $input
6        $out_file1
7  </command>
8  <inputs>
9    <param format="maf" name="input" type="data" label="Select pair-wise alignment data"/>
10  </inputs>
11  <outputs>
12    <data format="tabular" name="out_file1" metadata_source="input"/>
13  </outputs>
14
15  <tests>
16    <test>
17      <param name="input" value="Interval2Maf_pairwise_out.maf"/>
18      <output name="out_file1" file="subs.out"/>
19    </test>
20  </tests>
21 <help>
22
23.. class:: infomark
24
25**What it does**
26
27This tool takes a pairwise MAF file as input and fetches substitutions per alignment block.
28
29-----
30
31.. class:: warningmark
32
33**Note**
34
35Any block/s not containing exactly two sequences, will be omitted.
36
37  </help> 
38</tool>
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