root/galaxy-central/tools/stats/generate_matrix_for_pca_lda.xml

リビジョン 2, 1.6 KB (コミッタ: hatakeyama, 14 年 前)

import galaxy-central

行番号 
1<tool id="generate_matrix_for_pca_and_lda1" name="Generate A Matrix">
2    <description>for using PC and LDA</description>
3    <command interpreter="perl">generate_matrix_for_pca_lda.pl $input_1 $input_2 $output</command>
4
5    <inputs>
6        <param format="tabular" name="input_1" type="data" label="Source file First: a matrix (samples/observations in rows and variables/features in columns)"> </param>
7        <param format="tabular" name="input_2" type="data" label="Source file Second: a table (samples/observations with response/class label)"> </param>
8    </inputs>
9
10    <outputs>
11        <data format="tabular" name="output" />
12    </outputs>
13
14    <tests>
15        <test>
16            <param name="input_1" value="matrix_generator_for_pc_and_lda_input_1.tabular"/>
17            <param name="input_2" value="matrix_generator_for_pc_and_lda_input_2.tabular"/>
18            <output name="output" file="matrix_generator_for_pc_and_lda_output.tabular"/>
19        </test>
20    </tests>
21
22    <help>
23
24.. class:: infomark
25
26**What it does**
27
28This tool consists of a module to generate a matrix to be used for running the Linear Discriminant Analysis as described in Carrel et al., 2006 (PMID: 17009873)
29
30*Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, et al. (2006) Genomic Environment Predicts Expression Patterns on the Human     Inactive X Chromosome. PLoS Genet 2(9): e151. doi:10.1371/journal.pgen.0020151*
31
32-----
33
34**Example**
35
36- Input file (Source file First)
37
38.. image:: ../static/images/tools/lda/first_matrix_generator_example_file.png
39
40
41- Input file (Source file Second)
42
43.. image:: ../static/images/tools/lda/second_matrix_generator_example_file.png
44
45
46</help>
47
48</tool>
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