root/galaxy-central/tools/unix_tools/uniq_tool.xml

リビジョン 3, 1.1 KB (コミッタ: kohda, 14 年 前)

Install Unix tools  http://hannonlab.cshl.edu/galaxy_unix_tools/galaxy.html

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1<tool id="cshl_uniq_tool" name="uniq">
2  <command>
3        uniq -f $skipfields $count $repeated $ignorecase $uniqueonly $input $output
4  </command>
5
6  <inputs>
7        <param format="txt" name="input" type="data" label="file to scan for unique values" />
8               
9        <param name="count" type="boolean" label="count [-c]" help="prefix lines by the number of occurrences" truevalue="-c" falsevalue="" />
10
11        <param name="repeated" type="boolean" label="repeated [-d]" help="only print duplicate lines" truevalue="-d" falsevalue="" />
12
13        <param name="ignorecase" type="boolean" label="ignore case [-i]" help="ignore differences in case when comparing" truevalue="-i" falsevalue="" />
14
15        <param name="uniqueonly" type="boolean" label="unique only [-u]" help="only print unique lines" truevalue="-u" falsevalue="" />
16
17        <param name="skipfields" type="integer" label="skip fields [-f]" help="avoind comparing the first N fields. (use zero to start from the first field)" size="2" value="0" />
18  </inputs>
19
20  <outputs>
21    <data format="input" name="output" metadata_source="input"/>
22  </outputs>
23  <help>
24  </help>
25</tool>
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