チケット #220: search_api_en.html

ファイル search_api_en.html, 39.7 KB (登録者: yy, 17 年 前)

「検索 WebAPI 機能の仕様」の英語版です。

行番号 
1<!DOCTYPE html
2        PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
3         "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
4<html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
5<head>
6<title>OReFiL: Help</title>
7<style type="text/css">
8<!--/* <![CDATA[ */
9.a {color: green}
10.b {border: thin dotted #888; font-size:18px}
11.e {background: #eee}
12.m {text-decoration: none; background: #eef; margin: .1ex .1em .1ex .1em}
13.n {background: #ddd}
14a.m:link {color: #00f}
15a.m:visited {color: #00f}
16a.m:hover {color: #770}
17a.m:active {color: #00f}
18h1 {text-indent: .2em; border-color: black; border-width: 0 0 1px 4px; border-style: none none solid double}
19h2 {margin-bottom: 20px; padding: 8px 0; border-top: 6px solid #444; border-bottom: 6px solid #444; text-indent: .2em;}
20h3 {padding: .2em .3em .2em .3em; margin: 0 0 .5em 0; color: white; background: #444}
21ul {margin-top: 0; margin-bottom: 3ex}
22li {margin-bottom: .7ex}
23body {font-family: Arial, sans-serif; margin: 1.5ex; padding: 0; line-height: 1.4; color: #333; font-size: 0.9em}
24html {overflow-y:scroll;}
25p {margin: .7ex .7em .7ex .7em}
26table {
27        margin: 0 0 3ex 7ex;
28        border: 1px solid #CCCCCC;
29        border-collapse: separate;
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31}
32td {
33        border: 1px solid #CCCCCC;
34        border-collapse: separate;
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36}
37pre {
38        width: 500px;
39        padding: 2em;
40        overflow: auto;
41        border: 1px solid #CCCCCC;
42        border-collapse: separate;
43        border-spacing: 1px;
44}
45/* ]]> */-->
46</style>
47</head>
48<body>
49<h1>Specification of the OReFiL WebAPI</h1>
50<ul>
51<li><a href="#sec_1">SOAP Interface</a></li>
52<li><a href="#sec_2">REST Interface</a></li>
53<li><a href="#sec_3">Responses</a></li>
54<li><a href="#sec_4">SOAP Request / Response Sample</a></li>
55<li><a href="#sec_5">REST Request / Response Sample</a></li>
56</ul>
57<center><p><a href="/">Begin a search</a></p>
58<p>Comments and suggestions are welcome, please send an email to yayamamo AT cb DOT k DOT u-tokyo DOT ac DOT jp.</p></center>
59
60<h2>Interface Specifications</h2>
61
62<a id="sec_1"></a>
63<h3 id="SOAP">SOAP</h3>
64<ul><li>WSDL
65<ul><li>/search/service.wsdl
66</li></ul></li><li>Entry Point
67<ul><li>/search/api
68</li></ul></li><li>SOAPAction
69<ul><li>/search/api/GetResourceInfoByQueryTerm
70</li></ul></li><li>Parameters
71</li></ul><table class="wiki">
72<tr><td> Name </td><td> Description </td><td> Must/Optional </td><td> Default Value </td><td> Allowable Values
73</td></tr><tr><td> expression </td><td> Query String </td><td> Must </td><td> - </td><td> Expression that can be acceptable by IndriRunQuery
74</td></tr><tr><td> max_results </td><td> Maximum Number of Result Entries </td><td> Must </td><td> - </td><td> 1 - 1000
75</td></tr><tr><td> order </td><td> Sort Order </td><td> Must </td><td> - </td><td> `relevance` or `date`
76</td></tr><tr><td> enable_hide_unfetched </td><td> Display or Hide of Status 404 URLs </td><td> Must </td><td> - </td><td> `true` or `false`
77</td></tr><tr><td> enable_relevance_feedback </td><td> Relevance Feedback </td><td> Must </td><td> - </td><td> `true` or `false`
78</td></tr></table>
79<ul><li>Errors
80<ul><li>Follows the SOAP error specification as much as possible.
81</li><li>Internal Server Error may occur unless enough parameters are given.
82</li></ul></li></ul>
83
84<a id="sec_2"></a>
85<h3 id="REST">REST</h3>
86<ul><li>URI
87<ul><li>/search.xml
88</li></ul></li><li>Parameters
89<ul><li>Given by GET parameters or POST parameters
90</li></ul></li></ul><table class="wiki">
91<tr><td> Name </td><td> Description </td><td> Must/Optional </td><td> Default Value </td><td> Allowbale Values
92</td></tr><tr><td> query </td><td> Query String </td><td> Must </td><td> - </td><td> Expression that can be acceptable by IndriRunQuery
93</td></tr><tr><td> count </td><td> Maximum Number of Result Entries </td><td> Optional </td><td> 100 </td><td> 1 - 1000
94</td></tr><tr><td> sort_by </td><td> Sort Order </td><td> Optional </td><td> relevance </td><td> `relevance` or `date`
95</td></tr><tr><td> hide_unfetched </td><td> Display or Hide of Status 404 URLs </td><td> Optional </td><td> on </td><td> `on` or `off`
96</td></tr><tr><td> feedback </td><td> Relevance Feedback </td><td> Optional </td><td> off </td><td> `on` or `off`
97</td></tr></table>
98<ul><li>Errors
99<ul><li>Basically users need to handle errors based on HTTP statuses.
100</li><li>The error description is given in an XML format as much as possible if there is an error in user parameters.
101<ul><li>Error description
102<ul><li>errors: a list of errors
103<ul><li>error: description of each error
104<ul><li>http_status_code: HTTP status code
105</li><li>code: application error code
106</li><li>name: error name
107</li><li>message: error message
108</li></ul></li></ul></li></ul></li><li>Error sample
109<pre class="wiki">&lt;?xml version="1.0" encoding="UTF-8"?&gt;
110&lt;errors&gt;
111  &lt;error&gt;
112    &lt;http_status_code&gt;400&lt;/http_status_code&gt;
113    &lt;code&gt;40003&lt;/code&gt;
114    &lt;name&gt;Orefil::InvalidCountError&lt;/name&gt;
115    &lt;message&gt;Set integer of 1 or more to `Max Results` value.&lt;/message&gt;
116  &lt;/error&gt;
117&lt;/errors&gt;
118</pre></li></ul></li></ul></li></ul>
119
120<a id="sec_3"></a>
121<h2>Response</h2>
122<ul><li>Result_Set: Results ( `result_set` if REST )
123<ul><li>query: Query string after applying the default value
124<ul><li>expression: Query string parameter
125</li><li>option: Option parameters
126<ul><li>max_results: Maximum number of results
127</li><li>order: Sort order
128</li><li>enable_hide_unfetched: Whether displaying status 404 URLs or not ( true / false )
129</li><li>enable_relevance_feedback: Relevane feedback ( true / false )
130</li></ul></li><li>last_index_date: Update time of the index
131</li></ul></li><li>status: Status of the result ( SOAP only )
132<ul><li>code: Status code
133</li><li>name: Status name
134</li><li>message: Status message
135</li></ul></li><li>results: A list of results
136<ul><li>item: A result ( `result` if REST)
137<ul><li>id: Online resource ID
138</li><li>rank: Rank in the result
139</li><li>title: Online resource title
140</li><li>updated_at: Update time ( XML Schema format )
141</li><li>average_stars: Average rating
142</li><li>snippet: Snippet
143</li><li>mesh_term_list: A list of MeSH terms
144<ul><li>item: A MeSH term ( mesh_term if REST )
145</li></ul></li><li>url: Online resource's URL
146</li><li>pages: A list of URLs that search for referring links
147<ul><li>item: Referring link search ( `page` if REST )
148<ul><li>name: Name of the search engine
149</li><li>url: URL for search
150</li></ul></li></ul></li><li>papers: A list of URLs that search for citing papers
151<ul><li>item: Citing paper search ( `paper` if REST )
152<ul><li>name: Name of the search engine
153</li><li>url: URL for search
154</li></ul></li></ul></li><li>pmid_list: A ilst of PMIDs that cite the resource
155<ul><li>item: pmid ( pmid if REST )
156</li></ul></li></ul></li></ul></li></ul></li></ul>
157
158<h2>Request / Response Sample</h2>
159<p>
160Here are samples of requests and their corresponding responses in SOAP and REST.
161</p>
162<ul><li>Request
163<ul><li>Query String: #filreq(DNA.majr #combine(genome))
164</li><li>Options
165<ul><li>Maximum Number of Results : 3
166</li><li>Sort Order: Relevance
167</li><li>Status 404 URLs: display
168</li><li>Relevance Feedback: off
169</li></ul></li></ul></li></ul>
170
171<a id="sec_4"></a>
172<h3 id="SOAP1">SOAP</h3>
173<ul><li>Request
174<pre class="wiki">&lt;?xml version="1.0" encoding="UTF-8"?&gt;
175
176  &lt;SOAP-ENV:Envelope
177
178    xmlns:xsd="http://www.w3.org/2001/XMLSchema"
179
180    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
181
182    xmlns:SOAP-ENC="http://schemas.xmlsoap.org/soap/encoding/"
183
184    SOAP-ENV:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"
185
186    xmlns:SOAP-ENV="http://schemas.xmlsoap.org/soap/envelope/"&gt;
187
188      &lt;SOAP-ENV:Body&gt;
189
190        &lt;m:GetResourceInfoByQueryTerm xmlns:m="urn:ActionWebService"&gt;
191
192          &lt;expression xsi:type="xsd:string"&gt;#filreq(DNA.majr #combine(genome))&lt;/expression&gt;
193
194          &lt;max_results xsi:type="xsd:int"&gt;3&lt;/max_results&gt;
195
196          &lt;order xsi:type="xsd:string"&gt;relevance&lt;/order&gt;
197
198          &lt;enable_hide_unfetched xsi:type="xsd:boolean"&gt;true&lt;/enable_hide_unfetched&gt;
199
200          &lt;enable_relevance_feedback xsi:type="xsd:boolean"&gt;false&lt;/enable_relevance_feedback&gt;
201
202        &lt;/m:GetResourceInfoByQueryTerm&gt;
203
204      &lt;/SOAP-ENV:Body&gt;
205
206    &lt;/SOAP-ENV:Envelope&gt;
207</pre></li><li>Response
208<pre class="wiki">&lt;?xml version="1.0" encoding="UTF-8" ?&gt;
209&lt;env:Envelope xmlns:xsd="http://www.w3.org/2001/XMLSchema"
210    xmlns:env="http://schemas.xmlsoap.org/soap/envelope/"
211    xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"&gt;
212  &lt;env:Body&gt;
213    &lt;n1:GetResourceInfoByQueryTermResponse xmlns:n1="urn:ActionWebService"
214        env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"&gt;
215
216      &lt;return xsi:type="n1:Retrieve..ResultSet"&gt;
217        &lt;results n2:arrayType="n1:Retrieve..Result[3]"
218            xmlns:n2="http://schemas.xmlsoap.org/soap/encoding/"
219            xsi:type="n2:Array"&gt;
220          &lt;item&gt;
221            &lt;id xsi:type="xsd:int"&gt;4980&lt;/id&gt;
222            &lt;mesh_term_list n2:arrayType="xsd:string[28]"
223                xsi:type="n2:Array"&gt;
224
225              &lt;item&gt;Abnormalities, Multiple&lt;/item&gt;
226              &lt;item&gt;Carbamoyl-Phosphate Synthase I Deficiency Disease&lt;/item&gt;
227              &lt;item&gt;Chickens&lt;/item&gt;
228              &lt;item&gt;Chromosome Deletion&lt;/item&gt;
229
230              &lt;item&gt;Chromosome Mapping&lt;/item&gt;
231              &lt;item&gt;Chromosomes, Human, Pair 2&lt;/item&gt;
232              &lt;item&gt;Computational Biology&lt;/item&gt;
233              &lt;item&gt;DNA Primers&lt;/item&gt;
234
235              &lt;item&gt;Database Management Systems&lt;/item&gt;
236              &lt;item&gt;Databases, Genetic&lt;/item&gt;
237              &lt;item&gt;Databases, Nucleic Acid&lt;/item&gt;
238              &lt;item&gt;Databases, Protein&lt;/item&gt;
239
240              &lt;item&gt;Exons&lt;/item&gt;
241              &lt;item&gt;Genome&lt;/item&gt;
242              &lt;item&gt;Genome, Human&lt;/item&gt;
243              &lt;item&gt;Genomics&lt;/item&gt;
244
245              &lt;item&gt;Information Storage and Retrieval&lt;/item&gt;
246              &lt;item&gt;Internet&lt;/item&gt;
247              &lt;item&gt;Linkage (Genetics)&lt;/item&gt;
248              &lt;item&gt;Microsatellite Repeats&lt;/item&gt;
249
250              &lt;item&gt;Polymorphism, Single Nucleotide&lt;/item&gt;
251              &lt;item&gt;Proteins&lt;/item&gt;
252              &lt;item&gt;Proteome&lt;/item&gt;
253              &lt;item&gt;Proteomics&lt;/item&gt;
254
255              &lt;item&gt;RNA, Messenger&lt;/item&gt;
256              &lt;item&gt;Sequence Alignment&lt;/item&gt;
257              &lt;item&gt;Software&lt;/item&gt;
258              &lt;item&gt;Zebrafish&lt;/item&gt;
259
260            &lt;/mesh_term_list&gt;
261            &lt;title xsi:type="xsd:string"&gt;UCSC Genome Browser Home&lt;/title&gt;
262            &lt;pmid_list n2:arrayType="xsd:string[15]"
263                xsi:type="n2:Array"&gt;
264              &lt;item&gt;16888352&lt;/item&gt;
265              &lt;item&gt;16381938&lt;/item&gt;
266
267              &lt;item&gt;12045153&lt;/item&gt;
268              &lt;item&gt;15216554&lt;/item&gt;
269              &lt;item&gt;17151077&lt;/item&gt;
270              &lt;item&gt;16888348&lt;/item&gt;
271
272              &lt;item&gt;16372332&lt;/item&gt;
273              &lt;item&gt;11932250&lt;/item&gt;
274              &lt;item&gt;16722777&lt;/item&gt;
275              &lt;item&gt;12519945&lt;/item&gt;
276
277              &lt;item&gt;16500937&lt;/item&gt;
278              &lt;item&gt;17142222&lt;/item&gt;
279              &lt;item&gt;15554057&lt;/item&gt;
280              &lt;item&gt;15608236&lt;/item&gt;
281
282              &lt;item&gt;16888346&lt;/item&gt;
283            &lt;/pmid_list&gt;
284            &lt;snippet xsi:type="xsd:string"&gt;Comparative &amp;lt;strong&amp;gt;Genomic&amp;lt;/strong&amp;gt; Analysis Using the UCSC &amp;lt;strong&amp;gt;Genome&amp;lt;/strong&amp;gt; Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape &amp;lt;strong&amp;gt;genomes&amp;lt;/strong&amp;gt;. The University of California Santa Cruz (UCSC) &amp;lt;strong&amp;gt;Genome&amp;lt;/strong&amp;gt; Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...&lt;/snippet&gt;
285
286            &lt;rank xsi:type="xsd:int"&gt;1&lt;/rank&gt;
287            &lt;papers n2:arrayType="n1:Retrieve..Paper[4]"
288                xsi:type="n2:Array"&gt;
289              &lt;item&gt;
290                &lt;name href="#id18291200"&gt;&lt;/name&gt;
291                &lt;url xsi:type="xsd:string"&gt;http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search&lt;/url&gt;
292
293              &lt;/item&gt;
294              &lt;item&gt;
295                &lt;name href="#id18285850"&gt;&lt;/name&gt;
296                &lt;url xsi:type="xsd:string"&gt;http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all&lt;/url&gt;
297
298              &lt;/item&gt;
299              &lt;item&gt;
300                &lt;name href="#id18277510"&gt;&lt;/name&gt;
301                &lt;url xsi:type="xsd:string"&gt;http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.ucsc.edu%2F&lt;/url&gt;
302              &lt;/item&gt;
303
304              &lt;item&gt;
305                &lt;name href="#id18264560"&gt;&lt;/name&gt;
306                &lt;url xsi:type="xsd:string"&gt;http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;btnG=Search&lt;/url&gt;
307              &lt;/item&gt;
308
309            &lt;/papers&gt;
310            &lt;average_stars xsi:type="xsd:double"&gt;+3.666666666666667&lt;/average_stars&gt;
311            &lt;url xsi:type="xsd:string"&gt;http://genome.ucsc.edu/&lt;/url&gt;
312            &lt;pages n2:arrayType="n1:Retrieve..Page[2]"
313                xsi:type="n2:Array"&gt;
314              &lt;item&gt;
315
316                &lt;name href="#id18255240"&gt;&lt;/name&gt;
317                &lt;url xsi:type="xsd:string"&gt;http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;btnG=Google+Search&lt;/url&gt;
318              &lt;/item&gt;
319              &lt;item&gt;
320
321                &lt;name href="#id18253260"&gt;&lt;/name&gt;
322                &lt;url xsi:type="xsd:string"&gt;http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1&lt;/url&gt;
323              &lt;/item&gt;
324            &lt;/pages&gt;
325
326            &lt;updated_at xsi:type="xsd:dateTime"&gt;2008-02-20T00:00:00+09:00&lt;/updated_at&gt;
327          &lt;/item&gt;
328          &lt;item&gt;
329            &lt;id xsi:type="xsd:int"&gt;7142&lt;/id&gt;
330            &lt;mesh_term_list n2:arrayType="xsd:string[9]"
331                xsi:type="n2:Array"&gt;
332
333              &lt;item&gt;Chromosome Mapping&lt;/item&gt;
334              &lt;item&gt;Databases, Genetic&lt;/item&gt;
335              &lt;item&gt;Gene Expression Profiling&lt;/item&gt;
336              &lt;item&gt;Genome&lt;/item&gt;
337
338              &lt;item&gt;Oligonucleotide Array Sequence Analysis&lt;/item&gt;
339              &lt;item&gt;Sequence Alignment&lt;/item&gt;
340              &lt;item&gt;Sequence Analysis, DNA&lt;/item&gt;
341              &lt;item&gt;Software&lt;/item&gt;
342
343              &lt;item&gt;User-Computer Interface&lt;/item&gt;
344            &lt;/mesh_term_list&gt;
345            &lt;title xsi:type="xsd:string"&gt;UCSC Genome Browser Home&lt;/title&gt;
346            &lt;pmid_list n2:arrayType="xsd:string[2]"
347                xsi:type="n2:Array"&gt;
348              &lt;item&gt;14681485&lt;/item&gt;
349
350              &lt;item&gt;16108715&lt;/item&gt;
351            &lt;/pmid_list&gt;
352            &lt;snippet xsi:type="xsd:string"&gt;Finding anchors for &amp;lt;strong&amp;gt;genomic&amp;lt;/strong&amp;gt; sequence comparison . Recent sequencing of the human and other mammalian &amp;lt;strong&amp;gt;genomes&amp;lt;/strong&amp;gt; has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice &amp;lt;strong&amp;gt;Genome&amp;lt;/strong&amp;gt; Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic &amp;lt;strong&amp;gt;Genome&amp;lt;/strong&amp;gt; Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...&lt;/snippet&gt;
353
354            &lt;rank xsi:type="xsd:int"&gt;2&lt;/rank&gt;
355            &lt;papers n2:arrayType="n1:Retrieve..Paper[4]"
356                xsi:type="n2:Array"&gt;
357              &lt;item&gt;
358                &lt;name href="#id18291200"&gt;&lt;/name&gt;
359                &lt;url xsi:type="xsd:string"&gt;http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search&lt;/url&gt;
360
361              &lt;/item&gt;
362              &lt;item&gt;
363                &lt;name href="#id18285850"&gt;&lt;/name&gt;
364                &lt;url xsi:type="xsd:string"&gt;http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all&lt;/url&gt;
365
366              &lt;/item&gt;
367              &lt;item&gt;
368                &lt;name href="#id18277510"&gt;&lt;/name&gt;
369                &lt;url xsi:type="xsd:string"&gt;http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.genome.ucsc.edu%2F&lt;/url&gt;
370              &lt;/item&gt;
371
372              &lt;item&gt;
373                &lt;name href="#id18264560"&gt;&lt;/name&gt;
374                &lt;url xsi:type="xsd:string"&gt;http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;btnG=Search&lt;/url&gt;
375              &lt;/item&gt;
376
377            &lt;/papers&gt;
378            &lt;average_stars xsi:type="xsd:double"&gt;+3&lt;/average_stars&gt;
379            &lt;url xsi:type="xsd:string"&gt;http://www.genome.ucsc.edu/&lt;/url&gt;
380            &lt;pages n2:arrayType="n1:Retrieve..Page[2]"
381                xsi:type="n2:Array"&gt;
382              &lt;item&gt;
383
384                &lt;name href="#id18255240"&gt;&lt;/name&gt;
385                &lt;url xsi:type="xsd:string"&gt;http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;btnG=Google+Search&lt;/url&gt;
386              &lt;/item&gt;
387              &lt;item&gt;
388
389                &lt;name href="#id18253260"&gt;&lt;/name&gt;
390                &lt;url xsi:type="xsd:string"&gt;http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1&lt;/url&gt;
391              &lt;/item&gt;
392            &lt;/pages&gt;
393
394            &lt;updated_at xsi:type="xsd:dateTime"&gt;2008-02-18T00:00:00+09:00&lt;/updated_at&gt;
395          &lt;/item&gt;
396          &lt;item&gt;
397            &lt;id xsi:type="xsd:int"&gt;7515&lt;/id&gt;
398            &lt;mesh_term_list n2:arrayType="xsd:string[4]"
399                xsi:type="n2:Array"&gt;
400
401              &lt;item&gt;Computational Biology&lt;/item&gt;
402              &lt;item&gt;Genomics&lt;/item&gt;
403              &lt;item&gt;Isochores&lt;/item&gt;
404              &lt;item&gt;Software&lt;/item&gt;
405
406            &lt;/mesh_term_list&gt;
407            &lt;title xsi:type="xsd:string"&gt;UCSC Genome Browser Home&lt;/title&gt;
408            &lt;pmid_list n2:arrayType="xsd:string[1]"
409                xsi:type="n2:Array"&gt;
410              &lt;item&gt;15215396&lt;/item&gt;
411            &lt;/pmid_list&gt;
412
413            &lt;snippet xsi:type="xsd:string"&gt;IsoFinder : computational prediction of isochores in &amp;lt;strong&amp;gt;genome&amp;lt;/strong&amp;gt; sequences . Isochores are long &amp;lt;strong&amp;gt;genome&amp;lt;/strong&amp;gt; segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous &amp;lt;strong&amp;gt;genome&amp;lt;/strong&amp;gt; regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...&lt;/snippet&gt;
414
415            &lt;rank xsi:type="xsd:int"&gt;3&lt;/rank&gt;
416            &lt;papers n2:arrayType="n1:Retrieve..Paper[4]"
417                xsi:type="n2:Array"&gt;
418              &lt;item&gt;
419                &lt;name href="#id18291200"&gt;&lt;/name&gt;
420                &lt;url xsi:type="xsd:string"&gt;http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search&lt;/url&gt;
421
422              &lt;/item&gt;
423              &lt;item&gt;
424                &lt;name href="#id18285850"&gt;&lt;/name&gt;
425                &lt;url xsi:type="xsd:string"&gt;http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all&lt;/url&gt;
426
427              &lt;/item&gt;
428              &lt;item&gt;
429                &lt;name href="#id18277510"&gt;&lt;/name&gt;
430                &lt;url xsi:type="xsd:string"&gt;http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&lt;/url&gt;
431              &lt;/item&gt;
432
433              &lt;item&gt;
434                &lt;name href="#id18264560"&gt;&lt;/name&gt;
435                &lt;url xsi:type="xsd:string"&gt;http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;btnG=Search&lt;/url&gt;
436              &lt;/item&gt;
437
438            &lt;/papers&gt;
439            &lt;average_stars xsi:type="xsd:double"&gt;+3&lt;/average_stars&gt;
440            &lt;url xsi:type="xsd:string"&gt;http://genome.cse.ucsc.edu/&lt;/url&gt;
441            &lt;pages n2:arrayType="n1:Retrieve..Page[2]"
442                xsi:type="n2:Array"&gt;
443              &lt;item&gt;
444
445                &lt;name href="#id18255240"&gt;&lt;/name&gt;
446                &lt;url xsi:type="xsd:string"&gt;http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;btnG=Google+Search&lt;/url&gt;
447              &lt;/item&gt;
448              &lt;item&gt;
449
450                &lt;name href="#id18253260"&gt;&lt;/name&gt;
451                &lt;url xsi:type="xsd:string"&gt;http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1&lt;/url&gt;
452              &lt;/item&gt;
453            &lt;/pages&gt;
454
455            &lt;updated_at xsi:type="xsd:dateTime"&gt;2008-02-17T00:00:00+09:00&lt;/updated_at&gt;
456          &lt;/item&gt;
457        &lt;/results&gt;
458        &lt;query xsi:type="n1:Retrieve..Query"&gt;
459          &lt;option xsi:type="n1:Retrieve..Option"&gt;
460
461            &lt;max_results xsi:type="xsd:int"&gt;3&lt;/max_results&gt;
462            &lt;enable_relevance_feedback xsi:type="xsd:boolean"&gt;false&lt;/enable_relevance_feedback&gt;
463            &lt;enable_hide_unfetched xsi:type="xsd:boolean"&gt;true&lt;/enable_hide_unfetched&gt;
464            &lt;order xsi:type="xsd:string"&gt;relevance&lt;/order&gt;
465
466          &lt;/option&gt;
467          &lt;expression xsi:type="xsd:string"&gt;#filreq(DNA.majr #combine(genome))&lt;/expression&gt;
468          &lt;last_index_date xsi:type="xsd:dateTime"&gt;2008-03-17T15:34:23+09:00&lt;/last_index_date&gt;
469        &lt;/query&gt;
470        &lt;status xsi:type="n1:Retrieve..Status"&gt;
471
472          &lt;name xsi:type="xsd:string"&gt;Orefil::Success&lt;/name&gt;
473          &lt;code xsi:type="xsd:string"&gt;20000&lt;/code&gt;
474          &lt;message xsi:type="xsd:string"&gt;success.&lt;/message&gt;
475        &lt;/status&gt;
476
477      &lt;/return&gt;
478    &lt;/n1:GetResourceInfoByQueryTermResponse&gt;
479    &lt;name id="id18291200"
480        xsi:type="xsd:string"
481        env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"&gt;BioMed Central&lt;/name&gt;
482    &lt;name id="id18285850"
483        xsi:type="xsd:string"
484        env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"&gt;Scirus&lt;/name&gt;
485    &lt;name id="id18277510"
486        xsi:type="xsd:string"
487        env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"&gt;HighWire Press&lt;/name&gt;
488
489    &lt;name id="id18264560"
490        xsi:type="xsd:string"
491        env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"&gt;Google Scholar&lt;/name&gt;
492    &lt;name id="id18255240"
493        xsi:type="xsd:string"
494        env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"&gt;Google&lt;/name&gt;
495    &lt;name id="id18253260"
496        xsi:type="xsd:string"
497        env:encodingStyle="http://schemas.xmlsoap.org/soap/encoding/"&gt;AltaVista&lt;/name&gt;
498  &lt;/env:Body&gt;
499
500&lt;/env:Envelope&gt;
501</pre>
502</li></ul>
503
504<a id="sec_5"></a>
505<h3 id="REST1">REST</h3>
506<ul><li>Request
507<pre class="wiki">/search.xml?query=%23filreq%28DNA.majr+%23combine%28genome%29%29&amp;count=3&amp;sort_by=relevance&amp;hide_unfetched=on
508</pre></li><li>Response
509<pre class="wiki">&lt;?xml version="1.0" encoding="UTF-8"?&gt;
510&lt;result_set&gt;
511  &lt;query&gt;
512    &lt;expression&gt;#filreq(DNA.majr #combine(genome))&lt;/expression&gt;
513    &lt;option&gt;
514      &lt;max_results&gt;3&lt;/max_results&gt;
515      &lt;order&gt;relevance&lt;/order&gt;
516      &lt;enable_hide_unfetched&gt;true&lt;/enable_hide_unfetched&gt;
517      &lt;enable_relevance_feedback&gt;false&lt;/enable_relevance_feedback&gt;
518    &lt;/option&gt;
519    &lt;last_index_date&gt;2008-03-04T17:05:26+09:00&lt;/last_index_date&gt;
520  &lt;/query&gt;
521  &lt;results&gt;
522    &lt;result&gt;
523      &lt;id&gt;4980&lt;/id&gt;
524      &lt;rank&gt;1&lt;/rank&gt;
525      &lt;title&gt;UCSC Genome Browser Home&lt;/title&gt;
526      &lt;updated_at&gt;2008-02-20T00:00:00+09:00&lt;/updated_at&gt;
527      &lt;average_stars&gt;3.4&lt;/average_stars&gt;
528      &lt;snippet&gt;
529        Comparative &lt;strong&gt;Genomic&lt;/strong&gt; Analysis Using the UCSC &lt;strong&gt;Genome&lt;/strong&gt; Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape &lt;strong&gt;genomes&lt;/strong&gt;. The University of California Santa Cruz (UCSC) &lt;strong&gt;Genome&lt;/strong&gt; Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...
530      &lt;/snippet&gt;
531      &lt;mesh_term_list&gt;
532        &lt;mesh_term&gt;Abnormalities, Multiple&lt;/mesh_term&gt;
533        &lt;mesh_term&gt;Carbamoyl-Phosphate Synthase I Deficiency Disease&lt;/mesh_term&gt;
534        &lt;mesh_term&gt;Chickens&lt;/mesh_term&gt;
535        &lt;mesh_term&gt;Chromosome Deletion&lt;/mesh_term&gt;
536        &lt;mesh_term&gt;Chromosome Mapping&lt;/mesh_term&gt;
537        &lt;mesh_term&gt;Chromosomes, Human, Pair 2&lt;/mesh_term&gt;
538        &lt;mesh_term&gt;Computational Biology&lt;/mesh_term&gt;
539        &lt;mesh_term&gt;DNA Primers&lt;/mesh_term&gt;
540        &lt;mesh_term&gt;Database Management Systems&lt;/mesh_term&gt;
541        &lt;mesh_term&gt;Databases, Genetic&lt;/mesh_term&gt;
542        &lt;mesh_term&gt;Databases, Nucleic Acid&lt;/mesh_term&gt;
543        &lt;mesh_term&gt;Databases, Protein&lt;/mesh_term&gt;
544        &lt;mesh_term&gt;Exons&lt;/mesh_term&gt;
545        &lt;mesh_term&gt;Genome&lt;/mesh_term&gt;
546        &lt;mesh_term&gt;Genome, Human&lt;/mesh_term&gt;
547        &lt;mesh_term&gt;Genomics&lt;/mesh_term&gt;
548        &lt;mesh_term&gt;Information Storage and Retrieval&lt;/mesh_term&gt;
549        &lt;mesh_term&gt;Internet&lt;/mesh_term&gt;
550        &lt;mesh_term&gt;Linkage (Genetics)&lt;/mesh_term&gt;
551        &lt;mesh_term&gt;Microsatellite Repeats&lt;/mesh_term&gt;
552        &lt;mesh_term&gt;Polymorphism, Single Nucleotide&lt;/mesh_term&gt;
553        &lt;mesh_term&gt;Proteins&lt;/mesh_term&gt;
554        &lt;mesh_term&gt;Proteome&lt;/mesh_term&gt;
555        &lt;mesh_term&gt;Proteomics&lt;/mesh_term&gt;
556        &lt;mesh_term&gt;RNA, Messenger&lt;/mesh_term&gt;
557        &lt;mesh_term&gt;Sequence Alignment&lt;/mesh_term&gt;
558        &lt;mesh_term&gt;Software&lt;/mesh_term&gt;
559        &lt;mesh_term&gt;Zebrafish&lt;/mesh_term&gt;
560      &lt;/mesh_term_list&gt;
561      &lt;url&gt;http://genome.ucsc.edu/&lt;/url&gt;
562      &lt;pages&gt;
563        &lt;page&gt;
564          &lt;name&gt;Google&lt;/name&gt;
565          &lt;url&gt;
566            http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;btnG=Google+Search
567          &lt;/url&gt;
568        &lt;/page&gt;
569        &lt;page&gt;
570          &lt;name&gt;AltaVista&lt;/name&gt;
571          &lt;url&gt;
572            http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1
573          &lt;/url&gt;
574        &lt;/page&gt;
575      &lt;/pages&gt;
576      &lt;papers&gt;
577        &lt;paper&gt;
578          &lt;name&gt;BioMed Central&lt;/name&gt;
579          &lt;url&gt;
580            http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search
581          &lt;/url&gt;
582        &lt;/paper&gt;
583        &lt;paper&gt;
584          &lt;name&gt;Scirus&lt;/name&gt;
585          &lt;url&gt;
586            http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all
587          &lt;/url&gt;
588        &lt;/paper&gt;
589        &lt;paper&gt;
590          &lt;name&gt;HighWire Press&lt;/name&gt;
591          &lt;url&gt;
592            http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007
593          &lt;/url&gt;
594        &lt;/paper&gt;
595        &lt;paper&gt;
596          &lt;name&gt;Google Scholar&lt;/name&gt;
597          &lt;url&gt;
598            http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;btnG=Search
599          &lt;/url&gt;
600        &lt;/paper&gt;
601      &lt;/papers&gt;
602      &lt;pmid_list&gt;
603        &lt;pmid&gt;16888352&lt;/pmid&gt;
604        &lt;pmid&gt;16381938&lt;/pmid&gt;
605        &lt;pmid&gt;12045153&lt;/pmid&gt;
606        &lt;pmid&gt;15216554&lt;/pmid&gt;
607        &lt;pmid&gt;17151077&lt;/pmid&gt;
608        &lt;pmid&gt;16888348&lt;/pmid&gt;
609        &lt;pmid&gt;16372332&lt;/pmid&gt;
610        &lt;pmid&gt;11932250&lt;/pmid&gt;
611        &lt;pmid&gt;16722777&lt;/pmid&gt;
612        &lt;pmid&gt;12519945&lt;/pmid&gt;
613        &lt;pmid&gt;16500937&lt;/pmid&gt;
614        &lt;pmid&gt;17142222&lt;/pmid&gt;
615        &lt;pmid&gt;15554057&lt;/pmid&gt;
616        &lt;pmid&gt;15608236&lt;/pmid&gt;
617        &lt;pmid&gt;16888346&lt;/pmid&gt;
618      &lt;/pmid_list&gt;
619    &lt;/result&gt;
620    &lt;result&gt;
621      &lt;id&gt;7142&lt;/id&gt;
622      &lt;rank&gt;2&lt;/rank&gt;
623      &lt;title&gt;UCSC Genome Browser Home&lt;/title&gt;
624      &lt;updated_at&gt;2008-02-18T00:00:00+09:00&lt;/updated_at&gt;
625      &lt;average_stars&gt;3.0&lt;/average_stars&gt;
626      &lt;snippet&gt;
627        Finding anchors for &lt;strong&gt;genomic&lt;/strong&gt; sequence comparison . Recent sequencing of the human and other mammalian &lt;strong&gt;genomes&lt;/strong&gt; has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice &lt;strong&gt;Genome&lt;/strong&gt; Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic &lt;strong&gt;Genome&lt;/strong&gt; Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...
628      &lt;/snippet&gt;
629      &lt;mesh_term_list&gt;
630        &lt;mesh_term&gt;Chromosome Mapping&lt;/mesh_term&gt;
631        &lt;mesh_term&gt;Databases, Genetic&lt;/mesh_term&gt;
632        &lt;mesh_term&gt;Gene Expression Profiling&lt;/mesh_term&gt;
633        &lt;mesh_term&gt;Genome&lt;/mesh_term&gt;
634        &lt;mesh_term&gt;Oligonucleotide Array Sequence Analysis&lt;/mesh_term&gt;
635        &lt;mesh_term&gt;Sequence Alignment&lt;/mesh_term&gt;
636        &lt;mesh_term&gt;Sequence Analysis, DNA&lt;/mesh_term&gt;
637        &lt;mesh_term&gt;Software&lt;/mesh_term&gt;
638        &lt;mesh_term&gt;User-Computer Interface&lt;/mesh_term&gt;
639      &lt;/mesh_term_list&gt;
640      &lt;url&gt;http://www.genome.ucsc.edu/&lt;/url&gt;
641      &lt;pages&gt;
642        &lt;page&gt;
643          &lt;name&gt;Google&lt;/name&gt;
644          &lt;url&gt;
645            http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;btnG=Google+Search
646          &lt;/url&gt;
647        &lt;/page&gt;
648        &lt;page&gt;
649          &lt;name&gt;AltaVista&lt;/name&gt;
650          &lt;url&gt;
651            http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1
652          &lt;/url&gt;
653        &lt;/page&gt;
654      &lt;/pages&gt;
655      &lt;papers&gt;
656        &lt;paper&gt;
657          &lt;name&gt;BioMed Central&lt;/name&gt;
658          &lt;url&gt;
659            http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search
660          &lt;/url&gt;
661        &lt;/paper&gt;
662        &lt;paper&gt;
663          &lt;name&gt;Scirus&lt;/name&gt;
664          &lt;url&gt;
665            http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all
666          &lt;/url&gt;
667        &lt;/paper&gt;
668        &lt;paper&gt;
669          &lt;name&gt;HighWire Press&lt;/name&gt;
670          &lt;url&gt;
671            http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007
672          &lt;/url&gt;
673        &lt;/paper&gt;
674        &lt;paper&gt;
675          &lt;name&gt;Google Scholar&lt;/name&gt;
676          &lt;url&gt;
677            http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;btnG=Search
678          &lt;/url&gt;
679        &lt;/paper&gt;
680      &lt;/papers&gt;
681      &lt;pmid_list&gt;
682        &lt;pmid&gt;14681485&lt;/pmid&gt;
683        &lt;pmid&gt;16108715&lt;/pmid&gt;
684      &lt;/pmid_list&gt;
685    &lt;/result&gt;
686    &lt;result&gt;
687      &lt;id&gt;7515&lt;/id&gt;
688      &lt;rank&gt;3&lt;/rank&gt;
689      &lt;title&gt;UCSC Genome Browser Home&lt;/title&gt;
690      &lt;updated_at&gt;2008-02-17T00:00:00+09:00&lt;/updated_at&gt;
691      &lt;average_stars&gt;3.0&lt;/average_stars&gt;
692      &lt;snippet&gt;
693        IsoFinder : computational prediction of isochores in &lt;strong&gt;genome&lt;/strong&gt; sequences . Isochores are long &lt;strong&gt;genome&lt;/strong&gt; segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous &lt;strong&gt;genome&lt;/strong&gt; regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...
694      &lt;/snippet&gt;
695      &lt;mesh_term_list&gt;
696        &lt;mesh_term&gt;Computational Biology&lt;/mesh_term&gt;
697        &lt;mesh_term&gt;Genomics&lt;/mesh_term&gt;
698        &lt;mesh_term&gt;Isochores&lt;/mesh_term&gt;
699        &lt;mesh_term&gt;Software&lt;/mesh_term&gt;
700      &lt;/mesh_term_list&gt;
701      &lt;url&gt;http://genome.cse.ucsc.edu/&lt;/url&gt;
702      &lt;pages&gt;
703        &lt;page&gt;
704          &lt;name&gt;Google&lt;/name&gt;
705          &lt;url&gt;
706            http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;btnG=Google+Search
707          &lt;/url&gt;
708        &lt;/page&gt;
709        &lt;page&gt;
710          &lt;name&gt;AltaVista&lt;/name&gt;
711          &lt;url&gt;
712            http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1
713          &lt;/url&gt;
714        &lt;/page&gt;
715      &lt;/pages&gt;
716      &lt;papers&gt;
717        &lt;paper&gt;
718          &lt;name&gt;BioMed Central&lt;/name&gt;
719          &lt;url&gt;
720            http://www.biomedcentral.com/search/results.asp?txtSearch1=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search
721          &lt;/url&gt;
722        &lt;/paper&gt;
723        &lt;paper&gt;
724          &lt;name&gt;Scirus&lt;/name&gt;
725          &lt;url&gt;
726            http://www.scirus.com/srsapp/search?q=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all
727          &lt;/url&gt;
728        &lt;/paper&gt;
729        &lt;paper&gt;
730          &lt;name&gt;HighWire Press&lt;/name&gt;
731          &lt;url&gt;
732            http://highwire.org/cgi/searchresults?fulltext=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007
733          &lt;/url&gt;
734        &lt;/paper&gt;
735        &lt;paper&gt;
736          &lt;name&gt;Google Scholar&lt;/name&gt;
737          &lt;url&gt;
738            http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;btnG=Search
739          &lt;/url&gt;
740        &lt;/paper&gt;
741      &lt;/papers&gt;
742      &lt;pmid_list&gt;
743        &lt;pmid&gt;15215396&lt;/pmid&gt;
744      &lt;/pmid_list&gt;
745    &lt;/result&gt;
746  &lt;/results&gt;
747&lt;/result_set&gt;
748</pre></li></ul>
749
750</body>
751</html>