チケット #47 (new 仕様) — at バージョン 2

登録: 17 年 前

最終更新: 17 年 前

Web API 機能の仕様

報告者: h-morita 担当者: h-morita
優先度: 各マイルストーンで解決する マイルストーン: Iterate5(1/10)
コンポーネント: OReFiL バージョン:
キーワード: 関係者:
GanttChart表示: OFF 依存TaskNo:
開始予定日: YYYY/MM/DD 終了予定日: YYYY/MM/DD

説明 (最終更新者: h-morita) (diff)

Web API 機能の仕様。

Web API 結果サンプル

  • 以下のクエリで Web API を呼び出した結果のサンプル
    • クエリ式 : #filreq(DNA.majr #combine(genome))
    • クエリ条件
      • 最大結果件数 : 5 件
      • ソート順序 : 関連度順
      • Page not Found なページを隠す : ○
      • 疑似関連フィードバックを有効 : ×
        <?xml version="1.0" encoding="UTF-8"?>
<result_set>
  <query>
    <expression>#filreq(DNA.majr #combine(genome))</expression>
    <option>
      <max_results>5</max_results>
      <order>relevance</order>
      <enable_hide_unfetched>true</enable_hide_unfetched>
      <enable_relevance_feedback>false</enable_relevance_feedback>
    </option>
    <last_index_date>2007-11-30</last_index_date>
  </query>
  <results>
    <result>
      <rank>1</rank>
      <title>UCSC Genome Browser Home</title>
      <snippet>Comparative &lt;strong&gt;Genomic&lt;/strong&gt; Analysis Using the UCSC &lt;strong&gt;Genome&lt;/strong&gt; Browser. Comparative analysis of DNA sequence from multiple species can provide insights into the function...sequence from multiple species can provide insights into the function and evolutionary processes that shape &lt;strong&gt;genomes&lt;/strong&gt;. The University of California Santa Cruz (UCSC) &lt;strong&gt;Genome&lt;/strong&gt; Bioinformatics group has developed several tools and methodologies in its study of comparative genomics, many...</snippet>
      <meshes>
        <mesh>Abnormalities, Multiple</mesh>
        <mesh>Carbamoyl-Phosphate Synthase I Deficiency Disease</mesh>
        <mesh>Chickens</mesh>
        <mesh>Chromosome Deletion</mesh>
        <mesh>Chromosome Mapping</mesh>
        <mesh>Chromosomes, Human, Pair 2</mesh>
        <mesh>Computational Biology</mesh>
        <mesh>DNA Primers</mesh>
        <mesh>Database Management Systems</mesh>
        <mesh>Databases, Genetic</mesh>
        <mesh>Databases, Nucleic Acid</mesh>
        <mesh>Databases, Protein</mesh>
        <mesh>Exons</mesh>
        <mesh>Genome</mesh>
        <mesh>Genome, Human</mesh>
        <mesh>Genomics</mesh>
        <mesh>Information Storage and Retrieval</mesh>
        <mesh>Internet</mesh>
        <mesh>Linkage (Genetics)</mesh>
        <mesh>Microsatellite Repeats</mesh>
        <mesh>Polymorphism, Single Nucleotide</mesh>
        <mesh>Proteins</mesh>
        <mesh>Proteome</mesh>
        <mesh>Proteomics</mesh>
        <mesh>RNA, Messenger</mesh>
        <mesh>Sequence Alignment</mesh>
        <mesh>Software</mesh>
        <mesh>Zebrafish</mesh>
      </meshes>
      <url>http://genome.ucsc.edu/</url>
      <pages>
        <google>http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;btnG=Google+Search</google>
        <altavista>http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fgenome.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1</altavista>
      </pages>
      <papers>
        <bio_med_central>http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search</bio_med_central>
        <scirus>http://www.scirus.com/srsapp/search?q=genome.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus>
        <high_wire_press>http://highwire.org/cgi/searchresults?fulltext=genome.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press>
        <google_scholar>http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=genome.ucsc.edu%2F&amp;amp;btnG=Search</google_scholar>
      </papers>
      <pubmeds>
        <pmid>16888352</pmid>
        <pmid>16381938</pmid>
        <pmid>12045153</pmid>
        <pmid>15216554</pmid>
        <pmid>17151077</pmid>
        <pmid>16888348</pmid>
        <pmid>16372332</pmid>
        <pmid>11932250</pmid>
        <pmid>16722777</pmid>
        <pmid>12519945</pmid>
        <pmid>16500937</pmid>
        <pmid>17142222</pmid>
        <pmid>15554057</pmid>
        <pmid>15608236</pmid>
        <pmid>16888346</pmid>
      </pubmeds>
    </result>
    <result>
      <rank>2</rank>
      <title>UCSC Genome Browser Home</title>
      <snippet>Finding anchors for &lt;strong&gt;genomic&lt;/strong&gt; sequence comparison . Recent sequencing of the human and other mammalian &lt;strong&gt;genomes&lt;/strong&gt; has brought about the necessity to align them , to identify and characterize their commonalities and...Algorithms Amino Acid Motifs Chromosome Mapping Sequence Analysis, DNA User-Computer Interface Databases, Genetic Mice &lt;strong&gt;Genome&lt;/strong&gt; Information Storage and Retrieval Internet Rats Computational Biology Software Models, Genetic Animals Oligonucleotide Array Sequence Analysis Databases, Genetic &lt;strong&gt;Genome&lt;/strong&gt; Gene Expression Profiling Sequence Alignment Software Chromosome Mapping Oligonucleotide Array Sequence Analysis User-Computer Interface Sequence Analysis, ... Nucleic Acid Hybridization Microarray Analysis Genetic Techniques Information Storage and Retrieval Sequence Analysis Chemistry, Analytical...</snippet>
      <meshes>
        <mesh>Chromosome Mapping</mesh>
        <mesh>Databases, Genetic</mesh>
        <mesh>Gene Expression Profiling</mesh>
        <mesh>Genome</mesh>
        <mesh>Oligonucleotide Array Sequence Analysis</mesh>
        <mesh>Sequence Alignment</mesh>
        <mesh>Sequence Analysis, DNA</mesh>
        <mesh>Software</mesh>
        <mesh>User-Computer Interface</mesh>
      </meshes>
      <url>http://www.genome.ucsc.edu/</url>
      <pages>
        <google>http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;btnG=Google+Search</google>
        <altavista>http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fwww.genome.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1</altavista>
      </pages>
      <papers>
        <bio_med_central>http://www.biomedcentral.com/search/results.asp?txtSearch1=www.genome.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search</bio_med_central>
        <scirus>http://www.scirus.com/srsapp/search?q=www.genome.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus>
        <high_wire_press>http://highwire.org/cgi/searchresults?fulltext=www.genome.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press>
        <google_scholar>http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=www.genome.ucsc.edu%2F&amp;amp;btnG=Search</google_scholar>
      </papers>
      <pubmeds>
        <pmid>14681485</pmid>
        <pmid>16108715</pmid>
      </pubmeds>
    </result>
    <result>
      <rank>3</rank>
      <title>UCSC Genome Browser Home</title>
      <snippet>IsoFinder : computational prediction of isochores in &lt;strong&gt;genome&lt;/strong&gt; sequences . Isochores are long &lt;strong&gt;genome&lt;/strong&gt; segments homogeneous in G+C . Here , we describe an algorithm ( IsoFinder ) running on the web...by each cut . This leads to the decomposition of a chromosome sequence into long homogeneous &lt;strong&gt;genome&lt;/strong&gt; regions ( LHGRs ) with well-defined mean G+C contents , each significantly different from the G...</snippet>
      <meshes>
        <mesh>Computational Biology</mesh>
        <mesh>Genomics</mesh>
        <mesh>Isochores</mesh>
        <mesh>Software</mesh>
      </meshes>
      <url>http://genome.cse.ucsc.edu/</url>
      <pages>
        <google>http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;btnG=Google+Search</google>
        <altavista>http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fgenome.cse.ucsc.edu%2F&amp;amp;kgs=0&amp;amp;kls=1</altavista>
      </pages>
      <papers>
        <bio_med_central>http://www.biomedcentral.com/search/results.asp?txtSearch1=genome.cse.ucsc.edu%2F&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search</bio_med_central>
        <scirus>http://www.scirus.com/srsapp/search?q=genome.cse.ucsc.edu%2F&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus>
        <high_wire_press>http://highwire.org/cgi/searchresults?fulltext=genome.cse.ucsc.edu%2F&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press>
        <google_scholar>http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=genome.cse.ucsc.edu%2F&amp;amp;btnG=Search</google_scholar>
      </papers>
      <pubmeds>
        <pmid>15215396</pmid>
      </pubmeds>
    </result>
    <result>
      <rank>4</rank>
      <title>Ensembl Genome Browser</title>
      <snippet>...http : //www . ensembl . org/ ) project provides a comprehensive and integrated source of annotation of chordate &lt;strong&gt;genome&lt;/strong&gt; sequences . Over the past year the number of &lt;strong&gt;genomes&lt;/strong&gt; available from Ensembl has increased from 15 to 33 , with the addition of sites for...Ensembl has increased from 15 to 33 , with the addition of sites for the mammalian &lt;strong&gt;genomes&lt;/strong&gt; of elephant , rabbit , armadillo , tenrec , platypus , pig , cat , bush baby , common shrew , microbat and european...</snippet>
      <meshes>
        <mesh>ADP-Ribosylation Factors</mesh>
        <mesh>Abnormalities, Multiple</mesh>
        <mesh>Alternative Splicing</mesh>
        <mesh>Automation</mesh>
        <mesh>Carbamoyl-Phosphate Synthase I Deficiency Disease</mesh>
        <mesh>Cardiomyopathy, Dilated</mesh>
        <mesh>Chickens</mesh>
        <mesh>Chromosome Deletion</mesh>
        <mesh>Chromosome Mapping</mesh>
        <mesh>Chromosomes, Human, Pair 2</mesh>
        <mesh>Computational Biology</mesh>
        <mesh>DNA Primers</mesh>
        <mesh>Database Management Systems</mesh>
        <mesh>Databases, Factual</mesh>
        <mesh>Databases, Genetic</mesh>
        <mesh>Databases, Nucleic Acid</mesh>
        <mesh>Dog Diseases</mesh>
        <mesh>Exons</mesh>
        <mesh>Expressed Sequence Tags</mesh>
        <mesh>GTP Phosphohydrolases</mesh>
        <mesh>Genes</mesh>
        <mesh>Genetic Techniques</mesh>
        <mesh>Genome</mesh>
        <mesh>Genome, Human</mesh>
        <mesh>Genomics</mesh>
        <mesh>Glycosyltransferases</mesh>
        <mesh>Information Dissemination</mesh>
        <mesh>Information Storage and Retrieval</mesh>
        <mesh>Internet</mesh>
        <mesh>Membrane Proteins</mesh>
        <mesh>Microsatellite Repeats</mesh>
        <mesh>Models, Biological</mesh>
        <mesh>Nucleic Acid Hybridization</mesh>
        <mesh>Oligonucleotide Array Sequence Analysis</mesh>
        <mesh>Polymorphism, Single Nucleotide</mesh>
        <mesh>Promoter Regions (Genetics)</mesh>
        <mesh>Quantitative Trait Loci</mesh>
        <mesh>Regulatory Sequences, Nucleic Acid</mesh>
        <mesh>Sarcoglycans</mesh>
        <mesh>Software</mesh>
        <mesh>Systems Biology</mesh>
        <mesh>Zebrafish</mesh>
        <mesh>Zebrafish Proteins</mesh>
      </meshes>
      <url>http://www.ensembl.org/index.html</url>
      <pages>
        <google>http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Fwww.ensembl.org%2Findex.html&amp;amp;btnG=Google+Search</google>
        <altavista>http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Fwww.ensembl.org%2Findex.html&amp;amp;kgs=0&amp;amp;kls=1</altavista>
      </pages>
      <papers>
        <bio_med_central>http://www.biomedcentral.com/search/results.asp?txtSearch1=www.ensembl.org%2Findex.html&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search</bio_med_central>
        <scirus>http://www.scirus.com/srsapp/search?q=www.ensembl.org%2Findex.html&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus>
        <high_wire_press>http://highwire.org/cgi/searchresults?fulltext=www.ensembl.org%2Findex.html&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press>
        <google_scholar>http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=www.ensembl.org%2Findex.html&amp;amp;btnG=Search</google_scholar>
      </papers>
      <pubmeds>
        <pmid>16381931</pmid>
        <pmid>15189572</pmid>
        <pmid>12385995</pmid>
        <pmid>11890680</pmid>
        <pmid>15216554</pmid>
        <pmid>16103655</pmid>
        <pmid>14681459</pmid>
        <pmid>15123595</pmid>
        <pmid>15608235</pmid>
        <pmid>12519943</pmid>
        <pmid>15078858</pmid>
        <pmid>15123591</pmid>
        <pmid>11752248</pmid>
        <pmid>17148474</pmid>
        <pmid>17537812</pmid>
        <pmid>16888346</pmid>
        <pmid>15123590</pmid>
        <pmid>16610137</pmid>
        <pmid>16729214</pmid>
      </pubmeds>
    </result>
    <result>
      <rank>5</rank>
      <title>BGI Rise Rice Genome Database</title>
      <snippet>A &lt;strong&gt;Genome&lt;/strong&gt;-wide Microsatellite Polymorphism Database for the Indica and Japonica Rice . Microsatellite ( MS ) polymorphism is an...from IRGSP and genetic markers from RGP . Based on genetic marker positions on the rice &lt;strong&gt;genome&lt;/strong&gt; ( http : //rise . &lt;strong&gt;genomics&lt;/strong&gt; . org . cn/rice2/index . jsp ) , we determined the approximate genetic distances of these MS loci...</snippet>
      <meshes>
        <mesh>DNA, Plant</mesh>
        <mesh>Databases, Genetic</mesh>
        <mesh>Genome, Plant</mesh>
        <mesh>Genomics</mesh>
        <mesh>Microsatellite Repeats</mesh>
        <mesh>Oryza sativa</mesh>
        <mesh>Polymorphism, Genetic</mesh>
      </meshes>
      <url>http://rise.genomics.org.cn/rice/index2.jsp</url>
      <pages>
        <google>http://www.google.com/search?hl=en&amp;amp;q=link%3ahttp%3A%2F%2Frise.genomics.org.cn%2Frice%2Findex2.jsp&amp;amp;btnG=Google+Search</google>
        <altavista>http://www.altavista.com/web/results?itag=ody&amp;amp;q=link:http%3A%2F%2Frise.genomics.org.cn%2Frice%2Findex2.jsp&amp;amp;kgs=0&amp;amp;kls=1</altavista>
      </pages>
      <papers>
        <bio_med_central>http://www.biomedcentral.com/search/results.asp?txtSearch1=rise.genomics.org.cn%2Frice%2Findex2.jsp&amp;amp;chkBMCJournals=true&amp;amp;chkCurrentOpinion=true&amp;amp;drpFromDate=&amp;amp;drpToDate=&amp;amp;chkNSP=true&amp;amp;drpAddedInLast=&amp;amp;drpOrderBy=by+date&amp;amp;drpPerPage=20&amp;amp;drpAbstract=no+abstract&amp;amp;strTempString=&amp;amp;strSearchBoxType=bmc_boolean_results&amp;amp;Search.x=10&amp;amp;jou_id=&amp;amp;Search.x=0&amp;amp;Search.y=0&amp;amp;Search=Search</bio_med_central>
        <scirus>http://www.scirus.com/srsapp/search?q=rise.genomics.org.cn%2Frice%2Findex2.jsp&amp;amp;ds=jnl&amp;amp;g=s&amp;amp;t=all</scirus>
        <high_wire_press>http://highwire.org/cgi/searchresults?fulltext=rise.genomics.org.cn%2Frice%2Findex2.jsp&amp;amp;andorexactfulltext=and&amp;amp;author1=&amp;amp;pubdate_year=&amp;amp;volume=&amp;amp;firstpage=&amp;amp;src=hw&amp;amp;searchsubmit=redo&amp;amp;resourcetype=1&amp;amp;search=Search&amp;amp;fmonth=Jan&amp;amp;fyear=1844&amp;amp;tmonth=Dec&amp;amp;tyear=2007&amp;amp;fdatedef=1+January+1844&amp;amp;tdatedef=31+Dec+2007</high_wire_press>
        <google_scholar>http://scholar.google.com/scholar?hl=en&amp;amp;lr=&amp;amp;q=rise.genomics.org.cn%2Frice%2Findex2.jsp&amp;amp;btnG=Search</google_scholar>
      </papers>
      <pubmeds>
        <pmid>14681438</pmid>
        <pmid>17452422</pmid>
      </pubmeds>
    </result>
  </results>
</result_set>

チケットの履歴

更新者: h-morita (17 年 前)

  • 説明 が変更されました (diff)

更新者: h-morita (17 年 前)

  • 説明 が変更されました (diff)
Note: チケットについてのヘルプは TracTickets を参照 して下さい。