| 1 | package hozo.sparql.gui;
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| 2 |
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| 3 | import hozo.maptool.MapFactory;
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| 4 |
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| 5 | import java.awt.BorderLayout;
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| 6 | import java.awt.GridLayout;
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| 7 | import java.awt.event.ActionEvent;
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| 8 | import java.awt.event.ActionListener;
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| 9 | import java.util.List;
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| 10 |
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| 11 | import javax.swing.*;
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| 12 |
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| 13 | import hozo.sparql.EndpointSettingsManager;
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| 14 | import hozo.sparql.SparqlQueryListener;
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| 15 |
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| 16 | import org.biohackathon.SPARQLBuilder.OWL.*;
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| 17 |
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| 18 | /*
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| 19 | import org.biohackathon.SPARQLBuilder.OWL.ClassLink;
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| 20 | import org.biohackathon.SPARQLBuilder.OWL.Direction;
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| 21 | import org.biohackathon.SPARQLBuilder.OWL.Instance;
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| 22 | import org.biohackathon.SPARQLBuilder.OWL.OWLQueryBuilder;
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| 23 | import org.biohackathon.SPARQLBuilder.OWL.OWLQueryBuilderImpl;
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| 24 | import org.biohackathon.SPARQLBuilder.OWL.Path;
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| 25 | import org.biohackathon.SPARQLBuilder.OWL.SClass;
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| 26 | */
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| 27 |
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| 28 |
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| 29 | public class SparqlBuilderPanel extends JPanel{
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| 30 |
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| 31 | JTextField jtf_start_class;
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| 32 | JTextField jtf_end_class;
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| 33 | JTextField jtf_mode;
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| 34 | JCheckBox jcb_count_ins;
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| 35 |
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| 36 | JTextArea jta_query;
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| 37 | MapFactory map;
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| 38 | SparqlSearchPanel search_panel;
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| 39 | //OWLQueryBuilderImpl builder;
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| 40 | QueryPathGenerator generator;
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| 41 |
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| 42 |
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| 43 | // public SparqlBuilderPanel(SparqlAccessorForm parent) {
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| 44 | // super(parent);
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| 45 | // initialize();
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| 46 | // this.parent = parent;
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| 47 | // }
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| 48 | /*
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| 49 | public OWLQueryBuilderImpl getOWLQueryBuilderImpl(){
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| 50 | makeOWLQueryBuilderImpl();
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| 51 |
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| 52 | return builder;
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| 53 | }*/
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| 54 |
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| 55 | public QueryPathGenerator getQueryPathGenerator(){
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| 56 | if ( generator == null ){
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| 57 | makeQueryPathGenerator();
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| 58 | }
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| 59 | return generator;
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| 60 | }
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| 61 |
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| 62 | /* SparqlBuilderPanel(SparqlAccessorForm sparqlAccessorForm){
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| 63 | super();
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| 64 |
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| 65 | this.setLayout(new BorderLayout());
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| 66 | JPanel jp_top = new JPanel();
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| 67 | jtf_start_class = new JTextField("http://dbpedia.org/ontology/Artist");
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| 68 | jp_top.add(new JLabel("Start Class:"));
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| 69 | jp_top.add(jtf_start_class);
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| 70 | JButton jb_start = new JButton("Select");
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| 71 | jp_top.add(jb_start);
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| 72 |
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| 73 | jtf_end_class = new JTextField("http://dbpedia.org/ontology/Award");
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| 74 | jp_top.add(new JLabel("End Class:"));
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| 75 | jp_top.add(jtf_end_class);
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| 76 | JButton jb_end = new JButton("Select");
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| 77 | jp_top.add(jb_end);
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| 78 |
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| 79 | JButton jb_get_path = new JButton("Get Path");
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| 80 | jp_top.add(jb_get_path);
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| 81 |
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| 82 | map = new MapFactory();
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| 83 | map.setSPARQLbuilder(this);
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| 84 |
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| 85 |
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| 86 | jb_get_path.addActionListener(new ActionListener() {
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| 87 |
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| 88 | @Override
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| 89 | public void actionPerformed(ActionEvent e) {
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| 90 | System.out.println("getPaths:::>>>>"+jtf_start_class.getText()
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| 91 | +"<===>"+jtf_end_class.getText());
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| 92 | //map.loadPathList(map.getDummyPathList());
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| 93 |
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| 94 | try {
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| 95 | System.out.println("getPaths:::>>>>"+jtf_start_class.getText()
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| 96 | +"<===>"+jtf_end_class.getText());
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| 97 | OWLQueryBuilderImpl builder = makeOWLQueryBuilderImpl();
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| 98 | Path[] path = builder.getPaths(jtf_start_class.getText(), jtf_end_class.getText());
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| 99 | System.out.println("RESULT:::>>>>"+path.length);
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| 100 |
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| 101 | map.loadPathList(path);
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| 102 | //jta_query.setText(createSPARQL(path[0]));
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| 103 |
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| 104 | } catch (Exception e1) {
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| 105 | // TODO Auto-generated catch block
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| 106 | e1.printStackTrace();
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| 107 | }
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| 108 |
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| 109 |
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| 110 |
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| 111 | }
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| 112 | });
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| 113 |
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| 114 | this.add(jp_top, BorderLayout.NORTH);
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| 115 | jta_query = new JTextArea();
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| 116 | this.add(new JScrollPane(jta_query), BorderLayout.CENTER);
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| 117 | JPanel jp_bottom = new JPanel();
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| 118 | jp_bottom.add(new JButton("make query"));
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| 119 | this.add(jp_bottom, BorderLayout.SOUTH);
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| 120 | }*/
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| 121 |
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| 122 |
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| 123 | SparqlBuilderPanel(SparqlSearchPanel panel){
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| 124 | super();
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| 125 | this.search_panel = panel;
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| 126 |
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| 127 | this.setLayout(new GridLayout(3,1));
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| 128 | JPanel jp1 = new JPanel();
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| 129 | jp1.setLayout(new BorderLayout());
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| 130 |
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| 131 | jtf_start_class = new JTextField(40);
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| 132 | jtf_start_class.setText("http://dbpedia.org/ontology/Artist");
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| 133 | //jtf_start_class.setText("http://purl.jp/bio/10/lsd/ontology/201209#EnglishCode");
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| 134 | //jtf_start_class.setText("http://purl.org/allie/ontology/201108#ShortForm");
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| 135 | jp1.add(new JLabel("Start Class:"),BorderLayout.WEST);
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| 136 | jp1.add(jtf_start_class,BorderLayout.CENTER);
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| 137 | JButton jb_start = new JButton("Select");
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| 138 | jp1.add(jb_start,BorderLayout.EAST);
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| 139 | jb_start.addActionListener(new ActionListener(){
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| 140 |
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| 141 | @Override
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| 142 | public void actionPerformed(ActionEvent arg0) {
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| 143 | // TODO Auto-generated method stub
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| 144 | System.out.println("jb_start action");
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| 145 | searchClass(jtf_start_class.getText());
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| 146 | String classURI = searchClass(jtf_start_class.getText());
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| 147 | jtf_start_class.setText(classURI);
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| 148 | }
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| 149 |
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| 150 | });
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| 151 |
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| 152 | JPanel jp2 = new JPanel();
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| 153 | jp2.setLayout(new BorderLayout());
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| 154 | jtf_end_class = new JTextField(40);
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| 155 | jtf_end_class.setText("http://dbpedia.org/ontology/Award");
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| 156 | //jtf_end_class.setText("http://purl.jp/bio/10/lsd/ontology/201209#JapaneseEntry");
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| 157 | //jtf_end_class.setText("http://purl.org/allie/ontology/201108#LongForm");
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| 158 |
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| 159 | jp2.add(new JLabel("End Class:"),BorderLayout.WEST);
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| 160 | jp2.add(jtf_end_class,BorderLayout.CENTER);
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| 161 | JButton jb_end = new JButton("Select");
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| 162 | jb_end.addActionListener(new ActionListener(){
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| 163 |
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| 164 | @Override
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| 165 | public void actionPerformed(ActionEvent arg0) {
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| 166 | // TODO Auto-generated method stub
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| 167 | System.out.println("jb_end action");
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| 168 | String classURI = searchClass(jtf_end_class.getText());
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| 169 | jtf_end_class.setText(classURI);
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| 170 | }
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| 171 |
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| 172 | });
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| 173 |
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| 174 |
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| 175 | jp2.add(jb_end,BorderLayout.EAST);
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| 176 |
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| 177 |
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| 178 |
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| 179 | JPanel jp3 = new JPanel();
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| 180 | jtf_mode = new JTextField(3);
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| 181 | jtf_mode.setText("0");
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| 182 | jp3.add(jtf_mode);
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| 183 |
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| 184 | jcb_count_ins = new JCheckBox("Count Ins.",false);
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| 185 | jp3.add(jcb_count_ins);
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| 186 |
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| 187 | JButton jb_get_path = new JButton("Get Path");
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| 188 | jp3.add(jb_get_path);
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| 189 |
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| 190 | map = new MapFactory();
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| 191 | map.setSPARQLbuilder(this);
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| 192 |
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| 193 |
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| 194 | jb_get_path.addActionListener(new ActionListener() {
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| 195 |
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| 196 | @Override
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| 197 | public void actionPerformed(ActionEvent e) {
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| 198 | System.out.println("get path action");
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| 199 | //map.loadPathList(map.getDummyPathList());
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| 200 |
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| 201 | try {
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| 202 | System.out.println("getPaths:::>>>>"+jtf_start_class.getText()
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| 203 | +"<===>"+jtf_end_class.getText());
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| 204 | String mode_str = jtf_mode.getText();
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| 205 | int mode = Integer.parseInt(mode_str);
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| 206 | if(mode!=0 && mode!=1){
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| 207 | mode = 0;
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| 208 | }
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| 209 |
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| 210 | boolean count_ins = jcb_count_ins.isSelected();
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| 211 | /*
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| 212 | Path[] path = getOWLQueryBuilderImpl().getPaths(
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| 213 | jtf_start_class.getText(), jtf_end_class.getText(),
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| 214 | mode, !count_ins);
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| 215 | */
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| 216 | Path[] path = getQueryPathGenerator().getPaths(jtf_start_class.getText(), jtf_end_class.getText(), !count_ins);
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| 217 | System.out.println("RESULT:::>>>>"+path.length);
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| 218 |
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| 219 | map.loadPathList(path);
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| 220 | //jta_query.setText(createSPARQL(path[0]));
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| 221 |
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| 222 | } catch (Exception e1) {
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| 223 | // TODO Auto-generated catch block
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| 224 | e1.printStackTrace();
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| 225 | System.out.println(e.toString());
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| 226 | }
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| 227 |
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| 228 |
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| 229 |
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| 230 | }
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| 231 | });
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| 232 |
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| 233 | this.add(jp1);
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| 234 | this.add(jp2);
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| 235 | this.add(jp3);
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| 236 |
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| 237 | // jta_query = new JTextArea();
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| 238 | // this.add(new JScrollPane(jta_query), BorderLayout.CENTER);
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| 239 | // JPanel jp_bottom = new JPanel();
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| 240 | // jp_bottom.add(new JButton("make query"));
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| 241 | // this.add(jp_bottom, BorderLayout.SOUTH);
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| 242 | }
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| 243 |
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| 244 |
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| 245 | String searchClass(String keyword){
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| 246 | System.out.println("SearcClass for..."+keyword);
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| 247 | String classURL ="";
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| 248 | try {
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| 249 | //SClass[] classes = this.getOWLQueryBuilderImpl().getOWLClasses(null, null, keyword, false);
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| 250 | SClass[] classes = this.getQueryPathGenerator().getClasses(keyword);
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| 251 | DefaultListModel model = new DefaultListModel();
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| 252 | for(int i=0;i<classes.length;i++){
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| 253 | model.addElement(classes[i].getClassURI());
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| 254 | System.out.println("..."+classes[i].getClassURI());
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| 255 | }
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| 256 | JList list = new JList(model);
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| 257 |
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| 258 | JScrollPane listScrollPane = new JScrollPane(list);
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| 259 |
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| 260 | Object[] msg ={
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| 261 | "Select a Class:",listScrollPane};
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| 262 |
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| 263 |
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| 264 | int isOK = JOptionPane.showConfirmDialog(null,msg,"Select Class",JOptionPane.OK_CANCEL_OPTION,JOptionPane.QUESTION_MESSAGE);
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| 265 |
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| 266 | if(isOK==JOptionPane.OK_OPTION){
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| 267 | int index = list.getSelectedIndex();
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| 268 | classURL = model.getElementAt(index).toString();
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| 269 | }
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| 270 |
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| 271 | } catch (Exception e) {
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| 272 | // TODO Auto-generated catch block
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| 273 | e.printStackTrace();
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| 274 | }
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| 275 |
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| 276 |
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| 277 | return classURL;
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| 278 | }
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| 279 |
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| 280 | public void setSPARQL(Path path,int num) throws Exception{
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| 281 | String text = createSPARQL(path,num);
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| 282 | //this.jta_query.setText(text);
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| 283 | this.search_panel.setQueryText(text);
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| 284 | }
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| 285 |
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| 286 | /*
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| 287 | void makeOWLQueryBuilderImpl() {
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| 288 | // String sparqlEndpoint = "http://lsd.dbcls.jp/sparql";
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| 289 | String sparqlEndpoint = search_panel.getSparqlAccessorForm().getCurrentEndPoint();
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| 290 |
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| 291 | // String sparqlEndpoint = "http://dbpedia.org/sparql";
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| 292 |
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| 293 | System.out.println("Create OWLQueryBuilder for "+sparqlEndpoint);
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| 294 |
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| 295 | builder = new OWLQueryBuilderImpl(sparqlEndpoint);
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| 296 |
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| 297 | String keyword = "\"artiste\"@fr";
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| 298 | String[] graphURIs = new String[0];
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| 299 | try {
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| 300 |
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| 301 | // OWLQueryBuilder builder = new OWLQueryBuilderImpl(sparqlEndpoint);
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| 302 | String[] clsURIs;
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| 303 | clsURIs = builder.getOWLClasses(graphURIs, keyword);
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| 304 | for(String cls: clsURIs){
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| 305 | System.out.println(cls);
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| 306 | }
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| 307 |
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| 308 | System.out.println("CLS");
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| 309 | ClassLink[] cls = builder.getNextClass(null, clsURIs[0], 0);
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| 310 | if( cls != null ){
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| 311 | for( ClassLink cl: cls){
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| 312 | System.out.println(cl.toString());
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| 313 | }
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| 314 | }
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| 315 |
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| 316 | System.out.println("CLS-INS");
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| 317 | cls = builder.getNextClassViaInstanceLink(null, clsURIs[0], 100);
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| 318 | if( cls != null ){
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| 319 | for( ClassLink cl: cls){
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| 320 | System.out.println(cl.toString());
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| 321 | }
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| 322 | }
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| 323 |
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| 324 | System.out.println("Instances");
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| 325 | Instance[] ins = builder.getInstances(null, "\"A.C. Reed\"@en");
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| 326 | if( ins != null ){
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| 327 | for( Instance in: ins){
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| 328 | System.out.println(in.toString());
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| 329 | }
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| 330 | }
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| 331 | } catch (Exception e) {
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| 332 | // TODO Auto-generated catch block
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| 333 | System.out.println(e.toString());
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| 334 | e.printStackTrace();
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| 335 | }
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| 336 |
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| 337 | //return (OWLQueryBuilderImpl) builder;
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| 338 | }
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| 339 | */
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| 340 |
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| 341 | void makeQueryPathGenerator() {
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| 342 | // String sparqlEndpoint = "http://lsd.dbcls.jp/sparql";
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| 343 | String sparqlEndpoint = search_panel.getSparqlAccessorForm().getCurrentEndPoint();
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| 344 |
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| 345 | // String sparqlEndpoint = "http://dbpedia.org/sparql";
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| 346 |
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| 347 | System.out.println("Create OWLQueryBuilder for "+sparqlEndpoint);
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| 348 |
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| 349 | generator = new QueryPathGenerator(sparqlEndpoint, "cdata");
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| 350 |
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| 351 |
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| 352 | //String keyword = "\"artiste\"@fr";
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| 353 | //String[] graphURIs = new String[0];
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| 354 | /*
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| 355 | try {
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| 356 |
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| 357 | // OWLQueryBuilder builder = new OWLQueryBuilderImpl(sparqlEndpoint);
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| 358 |
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| 359 | String[] clsURIs;
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| 360 | clsURIs = builder.getOWLClasses(graphURIs, keyword);
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| 361 | for(String cls: clsURIs){
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| 362 | System.out.println(cls);
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| 363 | }
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| 364 |
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| 365 | System.out.println("CLS");
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| 366 | ClassLink[] cls = builder.getNextClass(null, clsURIs[0], 0);
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| 367 | if( cls != null ){
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| 368 | for( ClassLink cl: cls){
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| 369 | System.out.println(cl.toString());
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| 370 | }
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| 371 | }
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| 372 |
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| 373 | System.out.println("CLS-INS");
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| 374 | cls = builder.getNextClassViaInstanceLink(null, clsURIs[0], 100);
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| 375 | if( cls != null ){
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| 376 | for( ClassLink cl: cls){
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| 377 | System.out.println(cl.toString());
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| 378 | }
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| 379 | }
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| 380 |
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| 381 | System.out.println("Instances");
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| 382 | Instance[] ins = builder.getInstances(null, "\"A.C. Reed\"@en");
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| 383 | if( ins != null ){
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| 384 | for( Instance in: ins){
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| 385 | System.out.println(in.toString());
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| 386 | }
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| 387 | }
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| 388 | } catch (Exception e) {
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| 389 | // TODO Auto-generated catch block
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| 390 | System.out.println(e.toString());
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| 391 | e.printStackTrace();
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| 392 | }*/
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| 393 |
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| 394 | //return (OWLQueryBuilderImpl) builder;
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| 395 | }
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| 396 |
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| 397 |
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| 398 | public String createSPARQL(Path path) throws Exception {
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| 399 | return createSPARQL(path, 0);
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| 400 | }
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| 401 |
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| 402 | public String createSPARQL(Path path, int num) throws Exception {
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| 403 |
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| 404 | if( path == null ){
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| 405 | throw new Exception("Path is null.");
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| 406 | }
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| 407 | String startClass = path.getStartClass();
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| 408 | List<ClassLink> classLinks = path.getClassLinks();
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| 409 |
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| 410 | StringBuffer queryStr = new StringBuffer();
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| 411 | StringBuffer selStr = new StringBuffer();
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| 412 | StringBuffer whereStr = new StringBuffer();
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| 413 | if(num==0){
|
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| 414 | num = classLinks.size();
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| 415 | }
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| 416 |
|
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| 417 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
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| 418 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
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| 419 |
|
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| 420 | selStr.append("SELECT ");
|
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| 421 | whereStr.append("WHERE { \n");
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| 422 |
|
|---|
| 423 | String properties = null;
|
|---|
| 424 | String objectClasses = null;
|
|---|
| 425 | String subjectClasses = null;
|
|---|
| 426 | Direction direction = null;
|
|---|
| 427 | int i = 0;
|
|---|
| 428 | int k = 0;
|
|---|
| 429 | for (ClassLink link :classLinks )
|
|---|
| 430 | {
|
|---|
| 431 | properties = link.getPropertyURI();
|
|---|
| 432 | objectClasses = link.getLinkedClassURI();
|
|---|
| 433 | direction = link.getDirection();
|
|---|
| 434 |
|
|---|
| 435 | if (i==0)
|
|---|
| 436 | subjectClasses = startClass;
|
|---|
| 437 |
|
|---|
| 438 | selStr.append("?c").append(i).append(" ");
|
|---|
| 439 | selStr.append("?l").append(i).append(" ");
|
|---|
| 440 |
|
|---|
| 441 | if(i == classLinks.size())
|
|---|
| 442 | selStr.append("\n");
|
|---|
| 443 |
|
|---|
| 444 |
|
|---|
| 445 | whereStr.append("?c").append(i).
|
|---|
| 446 | append(" rdf:type ").
|
|---|
| 447 | append("<").
|
|---|
| 448 | append(subjectClasses).
|
|---|
| 449 | append(">").
|
|---|
| 450 | append(".\n");
|
|---|
| 451 |
|
|---|
| 452 | whereStr.append("OPTIONAL{\n?c"+i+" rdfs:label ?l"+i+".}\n");
|
|---|
| 453 |
|
|---|
| 454 |
|
|---|
| 455 | if(direction == Direction.forward)
|
|---|
| 456 | {
|
|---|
| 457 | whereStr.append("?c").append(i).append(" ");
|
|---|
| 458 | whereStr.append("<").append(properties).append("> ");
|
|---|
| 459 | whereStr.append("?c").append(i+1).append(".\n");
|
|---|
| 460 | }
|
|---|
| 461 | else
|
|---|
| 462 | {
|
|---|
| 463 | whereStr.append("?c").append(i+1).append(" ");
|
|---|
| 464 | whereStr.append("<").append(properties).append("> ");
|
|---|
| 465 | whereStr.append("?c").append(i).append(".\n");
|
|---|
| 466 | }
|
|---|
| 467 |
|
|---|
| 468 | subjectClasses = objectClasses;
|
|---|
| 469 | i++;
|
|---|
| 470 | k++;
|
|---|
| 471 | if(k>=num){
|
|---|
| 472 | break;
|
|---|
| 473 | }
|
|---|
| 474 | }
|
|---|
| 475 |
|
|---|
| 476 | selStr.append("?c").append(i).append(" \n");
|
|---|
| 477 | selStr.append("?l").append(i).append(" \n");
|
|---|
| 478 | whereStr.append("?c").append(i).append(" rdf:type ").
|
|---|
| 479 | append("<").
|
|---|
| 480 | append(subjectClasses).
|
|---|
| 481 | append(">").
|
|---|
| 482 | append(".\n");
|
|---|
| 483 | whereStr.append("OPTIONAL{\n?c"+i+" rdfs:label ?l"+i+".}\n");
|
|---|
| 484 |
|
|---|
| 485 |
|
|---|
| 486 | queryStr.append(selStr).append(whereStr);
|
|---|
| 487 |
|
|---|
| 488 | queryStr.append("}");
|
|---|
| 489 | //OPTIONAL
|
|---|
| 490 | queryStr.append("LIMIT 100\n");;
|
|---|
| 491 |
|
|---|
| 492 | //System.out.println(queryStr);
|
|---|
| 493 | return queryStr.toString();
|
|---|
| 494 | }
|
|---|
| 495 |
|
|---|
| 496 |
|
|---|
| 497 |
|
|---|
| 498 | }
|
|---|
| 499 |
|
|---|
| 500 | class classSelectDialog extends JDialog{
|
|---|
| 501 |
|
|---|
| 502 | classSelectDialog(){
|
|---|
| 503 | super();
|
|---|
| 504 | this.setVisible(true);
|
|---|
| 505 |
|
|---|
| 506 | }
|
|---|
| 507 |
|
|---|
| 508 |
|
|---|
| 509 |
|
|---|
| 510 | }
|
|---|
