| 1 | package hozo.sparql.gui;
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| 2 |
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| 3 | import hozo.maptool.MapFactory;
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| 4 |
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| 5 | import java.awt.BorderLayout;
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| 6 | import java.awt.GridLayout;
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| 7 | import java.awt.event.ActionEvent;
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| 8 | import java.awt.event.ActionListener;
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| 9 | import java.util.List;
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| 10 |
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| 11 | import javax.swing.*;
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| 12 |
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| 13 | import hozo.sparql.EndpointSettingsManager;
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| 14 | import hozo.sparql.SparqlQueryListener;
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| 15 |
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| 16 | import org.biohackathon.SPARQLBuilder.OWL.ClassLink;
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| 17 | import org.biohackathon.SPARQLBuilder.OWL.Direction;
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| 18 | import org.biohackathon.SPARQLBuilder.OWL.Instance;
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| 19 | import org.biohackathon.SPARQLBuilder.OWL.OWLQueryBuilder;
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| 20 | import org.biohackathon.SPARQLBuilder.OWL.OWLQueryBuilderImpl;
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| 21 | import org.biohackathon.SPARQLBuilder.OWL.Path;
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| 22 | import org.biohackathon.SPARQLBuilder.OWL.SClass;
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| 23 |
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| 24 |
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| 25 |
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| 26 | public class SparqlBuilderPanel extends JPanel{
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| 27 |
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| 28 | JTextField jtf_start_class;
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| 29 | JTextField jtf_end_class;
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| 30 | JTextField jtf_mode;
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| 31 | JCheckBox jcb_count_ins;
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| 32 |
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| 33 | JTextArea jta_query;
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| 34 | MapFactory map;
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| 35 | SparqlSearchPanel search_panel;
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| 36 | OWLQueryBuilderImpl builder;
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| 37 |
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| 38 | // public SparqlBuilderPanel(SparqlAccessorForm parent) {
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| 39 | // super(parent);
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| 40 | // initialize();
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| 41 | // this.parent = parent;
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| 42 | // }
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| 43 |
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| 44 | public OWLQueryBuilderImpl getOWLQueryBuilderImpl(){
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| 45 | makeOWLQueryBuilderImpl();
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| 46 |
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| 47 | return builder;
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| 48 | }
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| 49 |
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| 50 | /* SparqlBuilderPanel(SparqlAccessorForm sparqlAccessorForm){
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| 51 | super();
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| 52 |
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| 53 | this.setLayout(new BorderLayout());
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| 54 | JPanel jp_top = new JPanel();
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| 55 | jtf_start_class = new JTextField("http://dbpedia.org/ontology/Artist");
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| 56 | jp_top.add(new JLabel("Start Class:"));
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| 57 | jp_top.add(jtf_start_class);
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| 58 | JButton jb_start = new JButton("Select");
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| 59 | jp_top.add(jb_start);
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| 60 |
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| 61 | jtf_end_class = new JTextField("http://dbpedia.org/ontology/Award");
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| 62 | jp_top.add(new JLabel("End Class:"));
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| 63 | jp_top.add(jtf_end_class);
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| 64 | JButton jb_end = new JButton("Select");
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| 65 | jp_top.add(jb_end);
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| 66 |
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| 67 | JButton jb_get_path = new JButton("Get Path");
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| 68 | jp_top.add(jb_get_path);
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| 69 |
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| 70 | map = new MapFactory();
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| 71 | map.setSPARQLbuilder(this);
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| 72 |
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| 73 |
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| 74 | jb_get_path.addActionListener(new ActionListener() {
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| 75 |
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| 76 | @Override
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| 77 | public void actionPerformed(ActionEvent e) {
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| 78 | System.out.println("getPaths:::>>>>"+jtf_start_class.getText()
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| 79 | +"<===>"+jtf_end_class.getText());
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| 80 | //map.loadPathList(map.getDummyPathList());
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| 81 |
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| 82 | try {
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| 83 | System.out.println("getPaths:::>>>>"+jtf_start_class.getText()
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| 84 | +"<===>"+jtf_end_class.getText());
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| 85 | OWLQueryBuilderImpl builder = makeOWLQueryBuilderImpl();
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| 86 | Path[] path = builder.getPaths(jtf_start_class.getText(), jtf_end_class.getText());
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| 87 | System.out.println("RESULT:::>>>>"+path.length);
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| 88 |
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| 89 | map.loadPathList(path);
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| 90 | //jta_query.setText(createSPARQL(path[0]));
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| 91 |
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| 92 | } catch (Exception e1) {
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| 93 | // TODO Auto-generated catch block
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| 94 | e1.printStackTrace();
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| 95 | }
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| 96 |
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| 97 |
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| 98 |
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| 99 | }
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| 100 | });
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| 101 |
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| 102 | this.add(jp_top, BorderLayout.NORTH);
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| 103 | jta_query = new JTextArea();
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| 104 | this.add(new JScrollPane(jta_query), BorderLayout.CENTER);
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| 105 | JPanel jp_bottom = new JPanel();
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| 106 | jp_bottom.add(new JButton("make query"));
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| 107 | this.add(jp_bottom, BorderLayout.SOUTH);
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| 108 | }*/
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| 109 |
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| 110 |
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| 111 | SparqlBuilderPanel(SparqlSearchPanel panel){
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| 112 | super();
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| 113 | this.search_panel = panel;
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| 114 |
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| 115 | this.setLayout(new GridLayout(3,1));
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| 116 | JPanel jp1 = new JPanel();
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| 117 | jp1.setLayout(new BorderLayout());
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| 118 |
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| 119 | jtf_start_class = new JTextField(40);
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| 120 | //jtf_start_class.setText("http://dbpedia.org/ontology/Artist");
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| 121 | //jtf_start_class.setText("http://purl.jp/bio/10/lsd/ontology/201209#EnglishCode");
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| 122 | jtf_start_class.setText("http://purl.org/allie/ontology/201108#ShortForm");
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| 123 | jp1.add(new JLabel("Start Class:"),BorderLayout.WEST);
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| 124 | jp1.add(jtf_start_class,BorderLayout.CENTER);
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| 125 | JButton jb_start = new JButton("Select");
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| 126 | jp1.add(jb_start,BorderLayout.EAST);
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| 127 | jb_start.addActionListener(new ActionListener(){
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| 128 |
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| 129 | @Override
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| 130 | public void actionPerformed(ActionEvent arg0) {
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| 131 | // TODO Auto-generated method stub
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| 132 | System.out.println("jb_start action");
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| 133 | searchClass(jtf_start_class.getText());
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| 134 | String classURI = searchClass(jtf_start_class.getText());
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| 135 | jtf_start_class.setText(classURI);
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| 136 | }
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| 137 |
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| 138 | });
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| 139 |
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| 140 | JPanel jp2 = new JPanel();
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| 141 | jp2.setLayout(new BorderLayout());
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| 142 | jtf_end_class = new JTextField(40);
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| 143 | //jtf_end_class.setText("http://dbpedia.org/ontology/Award");
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| 144 | //jtf_end_class.setText("http://purl.jp/bio/10/lsd/ontology/201209#JapaneseEntry");
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| 145 | jtf_end_class.setText("http://purl.org/allie/ontology/201108#LongForm");
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| 146 |
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| 147 | jp2.add(new JLabel("End Class:"),BorderLayout.WEST);
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| 148 | jp2.add(jtf_end_class,BorderLayout.CENTER);
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| 149 | JButton jb_end = new JButton("Select");
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| 150 | jb_end.addActionListener(new ActionListener(){
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| 151 |
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| 152 | @Override
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| 153 | public void actionPerformed(ActionEvent arg0) {
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| 154 | // TODO Auto-generated method stub
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| 155 | System.out.println("jb_end action");
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| 156 | String classURI = searchClass(jtf_end_class.getText());
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| 157 | jtf_end_class.setText(classURI);
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| 158 | }
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| 159 |
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| 160 | });
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| 161 |
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| 162 |
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| 163 | jp2.add(jb_end,BorderLayout.EAST);
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| 164 |
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| 165 |
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| 166 |
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| 167 | JPanel jp3 = new JPanel();
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| 168 | jtf_mode = new JTextField(3);
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| 169 | jtf_mode.setText("0");
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| 170 | jp3.add(jtf_mode);
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| 171 |
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| 172 | jcb_count_ins = new JCheckBox("Count Ins.",false);
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| 173 | jp3.add(jcb_count_ins);
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| 174 |
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| 175 | JButton jb_get_path = new JButton("Get Path");
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| 176 | jp3.add(jb_get_path);
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| 177 |
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| 178 | map = new MapFactory();
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| 179 | map.setSPARQLbuilder(this);
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| 180 |
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| 181 |
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| 182 | jb_get_path.addActionListener(new ActionListener() {
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| 183 |
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| 184 | @Override
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| 185 | public void actionPerformed(ActionEvent e) {
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| 186 | System.out.println("get path action");
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| 187 | //map.loadPathList(map.getDummyPathList());
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| 188 |
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| 189 | try {
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| 190 | System.out.println("getPaths:::>>>>"+jtf_start_class.getText()
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| 191 | +"<===>"+jtf_end_class.getText());
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| 192 | String mode_str = jtf_mode.getText();
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| 193 | int mode = Integer.parseInt(mode_str);
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| 194 | if(mode!=0 && mode!=1){
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| 195 | mode = 0;
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| 196 | }
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| 197 |
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| 198 | boolean count_ins = jcb_count_ins.isSelected();
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| 199 |
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| 200 | Path[] path = getOWLQueryBuilderImpl().getPaths(
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| 201 | jtf_start_class.getText(), jtf_end_class.getText(),
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| 202 | mode, !count_ins);
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| 203 | System.out.println("RESULT:::>>>>"+path.length);
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| 204 |
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| 205 | map.loadPathList(path);
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| 206 | //jta_query.setText(createSPARQL(path[0]));
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| 207 |
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| 208 | } catch (Exception e1) {
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| 209 | // TODO Auto-generated catch block
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| 210 | e1.printStackTrace();
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| 211 | System.out.println(e.toString());
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| 212 | }
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| 213 |
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| 214 |
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| 215 |
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| 216 | }
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| 217 | });
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| 218 |
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| 219 | this.add(jp1);
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| 220 | this.add(jp2);
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| 221 | this.add(jp3);
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| 222 |
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| 223 | // jta_query = new JTextArea();
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| 224 | // this.add(new JScrollPane(jta_query), BorderLayout.CENTER);
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| 225 | // JPanel jp_bottom = new JPanel();
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| 226 | // jp_bottom.add(new JButton("make query"));
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| 227 | // this.add(jp_bottom, BorderLayout.SOUTH);
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| 228 | }
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| 229 |
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| 230 |
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| 231 | String searchClass(String keyword){
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| 232 | System.out.println("SearcClass for..."+keyword);
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| 233 | String classURL ="";
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| 234 | try {
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| 235 | SClass[] classes = this.getOWLQueryBuilderImpl().getOWLClasses(null, null, keyword, false);
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| 236 | DefaultListModel model = new DefaultListModel();
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| 237 | for(int i=0;i<classes.length;i++){
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| 238 | model.addElement(classes[i].getClassURI());
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| 239 | System.out.println("..."+classes[i].getClassURI());
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| 240 | }
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| 241 | JList list = new JList(model);
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| 242 |
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| 243 | JScrollPane listScrollPane = new JScrollPane(list);
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| 244 |
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| 245 | Object[] msg ={
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| 246 | "Select a Class:",listScrollPane};
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| 247 |
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| 248 |
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| 249 | int isOK = JOptionPane.showConfirmDialog(null,msg,"Select Class",JOptionPane.OK_CANCEL_OPTION,JOptionPane.QUESTION_MESSAGE);
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| 250 |
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| 251 | if(isOK==JOptionPane.OK_OPTION){
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| 252 | int index = list.getSelectedIndex();
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| 253 | classURL = model.getElementAt(index).toString();
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| 254 | }
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| 255 |
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| 256 | } catch (Exception e) {
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| 257 | // TODO Auto-generated catch block
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| 258 | e.printStackTrace();
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| 259 | }
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| 260 |
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| 261 |
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| 262 | return classURL;
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| 263 | }
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| 264 |
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| 265 | public void setSPARQL(Path path,int num) throws Exception{
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| 266 | String text = createSPARQL(path,num);
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| 267 | //this.jta_query.setText(text);
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| 268 | this.search_panel.setQueryText(text);
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| 269 | }
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| 270 |
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| 271 | void makeOWLQueryBuilderImpl() {
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| 272 | // String sparqlEndpoint = "http://lsd.dbcls.jp/sparql";
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| 273 | String sparqlEndpoint = search_panel.getSparqlAccessorForm().getCurrentEndPoint();
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| 274 |
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| 275 | // String sparqlEndpoint = "http://dbpedia.org/sparql";
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| 276 |
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| 277 | System.out.println("Create OWLQueryBuilder for "+sparqlEndpoint);
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| 278 |
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| 279 | builder = new OWLQueryBuilderImpl(sparqlEndpoint);
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| 280 | /*
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| 281 |
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| 282 | String keyword = "\"artiste\"@fr";
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| 283 | String[] graphURIs = new String[0];
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| 284 | try {
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| 285 |
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| 286 | // OWLQueryBuilder builder = new OWLQueryBuilderImpl(sparqlEndpoint);
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| 287 | String[] clsURIs;
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| 288 | clsURIs = builder.getOWLClasses(graphURIs, keyword);
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| 289 | for(String cls: clsURIs){
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| 290 | System.out.println(cls);
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| 291 | }
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| 292 |
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| 293 | System.out.println("CLS");
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| 294 | ClassLink[] cls = builder.getNextClass(null, clsURIs[0], 0);
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| 295 | if( cls != null ){
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| 296 | for( ClassLink cl: cls){
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| 297 | System.out.println(cl.toString());
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| 298 | }
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| 299 | }
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| 300 |
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| 301 | System.out.println("CLS-INS");
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| 302 | cls = builder.getNextClassViaInstanceLink(null, clsURIs[0], 100);
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| 303 | if( cls != null ){
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| 304 | for( ClassLink cl: cls){
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| 305 | System.out.println(cl.toString());
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| 306 | }
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| 307 | }
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| 308 |
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| 309 | System.out.println("Instances");
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| 310 | Instance[] ins = builder.getInstances(null, "\"A.C. Reed\"@en");
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| 311 | if( ins != null ){
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| 312 | for( Instance in: ins){
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| 313 | System.out.println(in.toString());
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| 314 | }
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| 315 | }
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| 316 | } catch (Exception e) {
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| 317 | // TODO Auto-generated catch block
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| 318 | System.out.println(e.toString());
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| 319 | e.printStackTrace();
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| 320 | }*/
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| 321 |
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| 322 | //return (OWLQueryBuilderImpl) builder;
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| 323 | }
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| 324 |
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| 325 | public String createSPARQL(Path path) throws Exception {
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| 326 | return createSPARQL(path, 0);
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| 327 | }
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| 328 |
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| 329 | public String createSPARQL(Path path, int num) throws Exception {
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| 330 |
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| 331 | if( path == null ){
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| 332 | throw new Exception("Path is null.");
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| 333 | }
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| 334 | String startClass = path.getStartClass();
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| 335 | List<ClassLink> classLinks = path.getClassLinks();
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| 336 |
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| 337 | StringBuffer queryStr = new StringBuffer();
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| 338 | StringBuffer selStr = new StringBuffer();
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| 339 | StringBuffer whereStr = new StringBuffer();
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| 340 | if(num==0){
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| 341 | num = classLinks.size();
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| 342 | }
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| 343 |
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| 344 | queryStr.append("PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>\n");
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| 345 | queryStr.append("PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#>\n");
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| 346 |
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| 347 | selStr.append("SELECT ");
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| 348 | whereStr.append("WHERE { \n");
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| 349 |
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| 350 | String properties = null;
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| 351 | String objectClasses = null;
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| 352 | String subjectClasses = null;
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| 353 | Direction direction = null;
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| 354 | int i = 0;
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| 355 | int k = 0;
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| 356 | for (ClassLink link :classLinks )
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| 357 | {
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| 358 | properties = link.getPropertyURI();
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| 359 | objectClasses = link.getLinkedClassURI();
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| 360 | direction = link.getDirection();
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| 361 |
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| 362 | if (i==0)
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| 363 | subjectClasses = startClass;
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| 364 |
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| 365 | selStr.append("?c").append(i).append(" ");
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| 366 | selStr.append("?l").append(i).append(" ");
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| 367 |
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| 368 | if(i == classLinks.size())
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| 369 | selStr.append("\n");
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| 370 |
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| 371 |
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| 372 | whereStr.append("?c").append(i).
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| 373 | append(" rdf:type ").
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| 374 | append("<").
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| 375 | append(subjectClasses).
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| 376 | append(">").
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| 377 | append(".\n");
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| 378 |
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| 379 | whereStr.append("OPTIONAL{\n?c"+i+" rdfs:label ?l"+i+".}\n");
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| 380 |
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| 381 |
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| 382 | if(direction == Direction.forward)
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| 383 | {
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| 384 | whereStr.append("?c").append(i).append(" ");
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| 385 | whereStr.append("<").append(properties).append("> ");
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| 386 | whereStr.append("?c").append(i+1).append(".\n");
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| 387 | }
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| 388 | else
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| 389 | {
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| 390 | whereStr.append("?c").append(i+1).append(" ");
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| 391 | whereStr.append("<").append(properties).append("> ");
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| 392 | whereStr.append("?c").append(i).append(".\n");
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| 393 | }
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| 394 |
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| 395 | subjectClasses = objectClasses;
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| 396 | i++;
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| 397 | k++;
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| 398 | if(k>=num){
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| 399 | break;
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| 400 | }
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| 401 | }
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| 402 |
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| 403 | selStr.append("?c").append(i).append(" \n");
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| 404 | selStr.append("?l").append(i).append(" \n");
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| 405 | whereStr.append("?c").append(i).append(" rdf:type ").
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| 406 | append("<").
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| 407 | append(subjectClasses).
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| 408 | append(">").
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| 409 | append(".\n");
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| 410 | whereStr.append("OPTIONAL{\n?c"+i+" rdfs:label ?l"+i+".}\n");
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| 411 |
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| 412 |
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| 413 | queryStr.append(selStr).append(whereStr);
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| 414 |
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| 415 | queryStr.append("}");
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| 416 | //OPTIONAL
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| 417 | queryStr.append("LIMIT 100\n");;
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| 418 |
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| 419 | //System.out.println(queryStr);
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| 420 | return queryStr.toString();
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| 421 | }
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| 422 |
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| 423 |
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| 424 |
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| 425 | }
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| 426 |
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| 427 | class classSelectDialog extends JDialog{
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| 428 |
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| 429 | classSelectDialog(){
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| 430 | super();
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| 431 | this.setVisible(true);
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| 432 |
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| 433 | }
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| 434 |
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| 435 |
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| 436 |
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| 437 | }
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