| 1 | /* | 
|---|
| 2 | * To change this license header, choose License Headers in Project Properties. | 
|---|
| 3 | * To change this template file, choose Tools | Templates | 
|---|
| 4 | * and open the template in the editor. | 
|---|
| 5 | */ | 
|---|
| 6 |  | 
|---|
| 7 | package org.biohackathon.SPARQLBuilder.www; | 
|---|
| 8 |  | 
|---|
| 9 | import java.io.*; | 
|---|
| 10 | import java.math.BigDecimal; | 
|---|
| 11 | import javax.servlet.ServletException; | 
|---|
| 12 | import javax.servlet.annotation.WebServlet; | 
|---|
| 13 | import javax.servlet.http.HttpServlet; | 
|---|
| 14 | import javax.servlet.http.HttpServletRequest; | 
|---|
| 15 | import javax.servlet.http.HttpServletResponse; | 
|---|
| 16 | import javax.servlet.http.HttpSession; | 
|---|
| 17 | import org.biohackathon.SPARQLBuilder.OWL.*; | 
|---|
| 18 | import javax.json.*; | 
|---|
| 19 | import java.util.*; | 
|---|
| 20 |  | 
|---|
| 21 | //import java.io.*; | 
|---|
| 22 |  | 
|---|
| 23 | /** | 
|---|
| 24 | * | 
|---|
| 25 | * @author atsuko | 
|---|
| 26 | */ | 
|---|
| 27 | @WebServlet(name = "EPServlet", urlPatterns = {"/eplist"}) | 
|---|
| 28 | public class EPServlet extends HttpServlet { | 
|---|
| 29 |  | 
|---|
| 30 | private static final String FILENAME = "cdata/"; | 
|---|
| 31 |  | 
|---|
| 32 | /** | 
|---|
| 33 | * Processes requests for both HTTP <code>GET</code> and <code>POST</code> | 
|---|
| 34 | * methods. | 
|---|
| 35 | * | 
|---|
| 36 | * @param request servlet request | 
|---|
| 37 | * @param response servlet response | 
|---|
| 38 | * @throws ServletException if a servlet-specific error occurs | 
|---|
| 39 | * @throws IOException if an I/O error occurs | 
|---|
| 40 | */ | 
|---|
| 41 | protected void processRequest(HttpServletRequest request, HttpServletResponse response) | 
|---|
| 42 | throws ServletException, IOException { | 
|---|
| 43 | response.setContentType("text/html;charset=UTF-8"); | 
|---|
| 44 | try (PrintWriter out = response.getWriter()) { | 
|---|
| 45 | /* TODO output your page here. You may use following sample code. */ | 
|---|
| 46 | out.println("<!DOCTYPE html>"); | 
|---|
| 47 | out.println("<html>"); | 
|---|
| 48 | out.println("<head>"); | 
|---|
| 49 | out.println("<title>Servlet EPServlet</title>"); | 
|---|
| 50 | out.println("</head>"); | 
|---|
| 51 | out.println("<body>"); | 
|---|
| 52 | out.println("<h1>Servlet EPServlet at " + request.getContextPath() + "</h1>"); | 
|---|
| 53 | out.println("</body>"); | 
|---|
| 54 | out.println("</html>"); | 
|---|
| 55 | } | 
|---|
| 56 | } | 
|---|
| 57 |  | 
|---|
| 58 | // <editor-fold defaultstate="collapsed" desc="HttpServlet methods. Click on the + sign on the left to edit the code."> | 
|---|
| 59 | /** | 
|---|
| 60 | * Handles the HTTP <code>GET</code> method. | 
|---|
| 61 | * | 
|---|
| 62 | * @param request servlet request | 
|---|
| 63 | * @param response servlet response | 
|---|
| 64 | * @throws ServletException if a servlet-specific error occurs | 
|---|
| 65 | * @throws IOException if an I/O error occurs | 
|---|
| 66 | */ | 
|---|
| 67 | @Override | 
|---|
| 68 | protected void doGet(HttpServletRequest request, HttpServletResponse response) | 
|---|
| 69 | throws ServletException, IOException { | 
|---|
| 70 | HttpSession session = request.getSession(); | 
|---|
| 71 | // Initialize the session | 
|---|
| 72 | session.removeAttribute("qpg"); | 
|---|
| 73 | //session.removeAttribute("graph"); | 
|---|
| 74 | QueryPathGenerator qpg = new QueryPathGenerator(); | 
|---|
| 75 |  | 
|---|
| 76 | response.setContentType("application/json;charset=UTF-8"); | 
|---|
| 77 | response.setHeader("Access-Control-Allow-Origin", "*"); | 
|---|
| 78 | response.setHeader("Access-Control-Allow-Methods", "GET"); | 
|---|
| 79 | response.setHeader("Access-Control-Allow-Headers", request.getHeader("Access-Control-Request-Headers")); | 
|---|
| 80 | response.setHeader("Access-Control-Max-Age", "-1"); | 
|---|
| 81 | PrintWriter out = response.getWriter(); | 
|---|
| 82 |  | 
|---|
| 83 | String ds = request.getParameter("ds"); | 
|---|
| 84 |  | 
|---|
| 85 | String[] elist = qpg.getFactory().getEndpointURIList(); | 
|---|
| 86 | SortedSet<String> sortedelist = new TreeSet<String>(); | 
|---|
| 87 | for (int i = 0; i < elist.length; i++ ){ | 
|---|
| 88 | sortedelist.add(elist[i]); | 
|---|
| 89 | } | 
|---|
| 90 | JsonBuilderFactory jbfactory = Json.createBuilderFactory(null); | 
|---|
| 91 | JsonArrayBuilder jab = jbfactory.createArrayBuilder(); | 
|---|
| 92 | if ( ds == null ){ | 
|---|
| 93 | Iterator<String> eit = sortedelist.iterator(); | 
|---|
| 94 | while( eit.hasNext() ){ | 
|---|
| 95 | jab.add(eit.next()); | 
|---|
| 96 | } | 
|---|
| 97 | JsonArray ja = jab.build(); | 
|---|
| 98 | out.print(ja); | 
|---|
| 99 | }else{ | 
|---|
| 100 | File dsf = new File("dstable.txt"); | 
|---|
| 101 | HashMap<String, String> demap = new HashMap<String, String>(); | 
|---|
| 102 | try{ | 
|---|
| 103 | BufferedReader br = new BufferedReader(new FileReader(dsf)); | 
|---|
| 104 | String buf; | 
|---|
| 105 | while ( (buf = br.readLine()) != null ){ | 
|---|
| 106 | String[] data = buf.split(","); | 
|---|
| 107 | if (data.length != 2 ){ continue; } | 
|---|
| 108 | demap.put(data[0],data[1]); | 
|---|
| 109 | } | 
|---|
| 110 | }catch(IOException e){ | 
|---|
| 111 | e.printStackTrace(); | 
|---|
| 112 | } | 
|---|
| 113 | Iterator<String> eit = sortedelist.iterator(); | 
|---|
| 114 | while( eit.hasNext() ){ | 
|---|
| 115 | JsonObjectBuilder job = jbfactory.createObjectBuilder(); | 
|---|
| 116 | String duri = eit.next(); | 
|---|
| 117 | String euri = duri; | 
|---|
| 118 | String ep = demap.get(duri); | 
|---|
| 119 | if ( ep != null ){ | 
|---|
| 120 | euri = ep; | 
|---|
| 121 | } | 
|---|
| 122 | job.add("label", duri); | 
|---|
| 123 | job.add("uri", euri); | 
|---|
| 124 | jab.add(job); | 
|---|
| 125 | } | 
|---|
| 126 | JsonArray ja = jab.build(); | 
|---|
| 127 | out.print(ja); | 
|---|
| 128 | } | 
|---|
| 129 | session.setAttribute("qpg", qpg); | 
|---|
| 130 | } | 
|---|
| 131 | /** | 
|---|
| 132 | * Handles the HTTP <code>POST</code> method. | 
|---|
| 133 | * | 
|---|
| 134 | * @param request servlet request | 
|---|
| 135 | * @param response servlet response | 
|---|
| 136 | * @throws ServletException if a servlet-specific error occurs | 
|---|
| 137 | * @throws IOException if an I/O error occurs | 
|---|
| 138 | */ | 
|---|
| 139 | @Override | 
|---|
| 140 | protected void doPost(HttpServletRequest request, HttpServletResponse response) | 
|---|
| 141 | throws ServletException, IOException { | 
|---|
| 142 | processRequest(request, response); | 
|---|
| 143 | } | 
|---|
| 144 |  | 
|---|
| 145 | /** | 
|---|
| 146 | * Returns a short description of the servlet. | 
|---|
| 147 | * | 
|---|
| 148 | * @return a String containing servlet description | 
|---|
| 149 | */ | 
|---|
| 150 | @Override | 
|---|
| 151 | public String getServletInfo() { | 
|---|
| 152 | return "Short description"; | 
|---|
| 153 | }// </editor-fold> | 
|---|
| 154 |  | 
|---|
| 155 | } | 
|---|