| 1 | /* |
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| 2 | * To change this license header, choose License Headers in Project Properties. |
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| 3 | * To change this template file, choose Tools | Templates |
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| 4 | * and open the template in the editor. |
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| 5 | */ |
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| 6 | |
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| 7 | package org.biohackathon.SPARQLBuilder.www; |
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| 8 | |
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| 9 | import java.io.*; |
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| 10 | import java.math.BigDecimal; |
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| 11 | import javax.servlet.ServletException; |
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| 12 | import javax.servlet.annotation.WebServlet; |
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| 13 | import javax.servlet.http.HttpServlet; |
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| 14 | import javax.servlet.http.HttpServletRequest; |
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| 15 | import javax.servlet.http.HttpServletResponse; |
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| 16 | import javax.servlet.http.HttpSession; |
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| 17 | import org.biohackathon.SPARQLBuilder.OWL.*; |
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| 18 | import javax.json.*; |
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| 19 | import java.util.*; |
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| 20 | |
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| 21 | //import java.io.*; |
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| 22 | |
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| 23 | /** |
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| 24 | * |
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| 25 | * @author atsuko |
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| 26 | */ |
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| 27 | @WebServlet(name = "EPServlet", urlPatterns = {"/eplist"}) |
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| 28 | public class EPServlet extends HttpServlet { |
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| 29 | |
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| 30 | private static final String FILENAME = "cdata/"; |
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| 31 | |
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| 32 | /** |
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| 33 | * Processes requests for both HTTP <code>GET</code> and <code>POST</code> |
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| 34 | * methods. |
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| 35 | * |
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| 36 | * @param request servlet request |
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| 37 | * @param response servlet response |
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| 38 | * @throws ServletException if a servlet-specific error occurs |
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| 39 | * @throws IOException if an I/O error occurs |
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| 40 | */ |
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| 41 | protected void processRequest(HttpServletRequest request, HttpServletResponse response) |
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| 42 | throws ServletException, IOException { |
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| 43 | response.setContentType("text/html;charset=UTF-8"); |
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| 44 | try (PrintWriter out = response.getWriter()) { |
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| 45 | /* TODO output your page here. You may use following sample code. */ |
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| 46 | out.println("<!DOCTYPE html>"); |
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| 47 | out.println("<html>"); |
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| 48 | out.println("<head>"); |
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| 49 | out.println("<title>Servlet EPServlet</title>"); |
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| 50 | out.println("</head>"); |
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| 51 | out.println("<body>"); |
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| 52 | out.println("<h1>Servlet EPServlet at " + request.getContextPath() + "</h1>"); |
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| 53 | out.println("</body>"); |
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| 54 | out.println("</html>"); |
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| 55 | } |
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| 56 | } |
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| 57 | |
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| 58 | // <editor-fold defaultstate="collapsed" desc="HttpServlet methods. Click on the + sign on the left to edit the code."> |
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| 59 | /** |
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| 60 | * Handles the HTTP <code>GET</code> method. |
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| 61 | * |
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| 62 | * @param request servlet request |
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| 63 | * @param response servlet response |
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| 64 | * @throws ServletException if a servlet-specific error occurs |
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| 65 | * @throws IOException if an I/O error occurs |
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| 66 | */ |
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| 67 | @Override |
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| 68 | protected void doGet(HttpServletRequest request, HttpServletResponse response) |
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| 69 | throws ServletException, IOException { |
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| 70 | HttpSession session = request.getSession(); |
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| 71 | // Initialize the session |
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| 72 | session.removeAttribute("qpg"); |
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| 73 | //session.removeAttribute("graph"); |
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| 74 | QueryPathGenerator qpg = new QueryPathGenerator(); |
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| 75 | |
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| 76 | response.setContentType("application/json;charset=UTF-8"); |
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| 77 | response.setHeader("Access-Control-Allow-Origin", "*"); |
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| 78 | response.setHeader("Access-Control-Allow-Methods", "GET"); |
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| 79 | response.setHeader("Access-Control-Allow-Headers", request.getHeader("Access-Control-Request-Headers")); |
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| 80 | response.setHeader("Access-Control-Max-Age", "-1"); |
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| 81 | PrintWriter out = response.getWriter(); |
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| 82 | |
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| 83 | String ds = request.getParameter("ds"); |
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| 84 | |
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| 85 | String[] elist = qpg.getFactory().getEndpointURIList(); |
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| 86 | SortedSet<String> sortedelist = new TreeSet<String>(); |
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| 87 | for (int i = 0; i < elist.length; i++ ){ |
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| 88 | sortedelist.add(elist[i]); |
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| 89 | } |
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| 90 | JsonBuilderFactory jbfactory = Json.createBuilderFactory(null); |
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| 91 | JsonArrayBuilder jab = jbfactory.createArrayBuilder(); |
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| 92 | if ( ds == null ){ |
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| 93 | Iterator<String> eit = sortedelist.iterator(); |
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| 94 | while( eit.hasNext() ){ |
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| 95 | jab.add(eit.next()); |
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| 96 | } |
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| 97 | JsonArray ja = jab.build(); |
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| 98 | out.print(ja); |
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| 99 | }else{ |
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| 100 | File dsf = new File("dstable.txt"); |
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| 101 | HashMap<String, String> demap = new HashMap<String, String>(); |
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| 102 | try{ |
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| 103 | BufferedReader br = new BufferedReader(new FileReader(dsf)); |
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| 104 | String buf; |
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| 105 | while ( (buf = br.readLine()) != null ){ |
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| 106 | String[] data = buf.split(","); |
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| 107 | if (data.length != 2 ){ continue; } |
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| 108 | demap.put(data[0],data[1]); |
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| 109 | } |
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| 110 | }catch(IOException e){ |
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| 111 | e.printStackTrace(); |
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| 112 | } |
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| 113 | Iterator<String> eit = sortedelist.iterator(); |
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| 114 | while( eit.hasNext() ){ |
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| 115 | JsonObjectBuilder job = jbfactory.createObjectBuilder(); |
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| 116 | String duri = eit.next(); |
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| 117 | String euri = duri; |
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| 118 | String ep = demap.get(duri); |
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| 119 | if ( ep != null ){ |
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| 120 | euri = ep; |
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| 121 | } |
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| 122 | job.add("label", duri); |
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| 123 | job.add("uri", euri); |
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| 124 | jab.add(job); |
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| 125 | } |
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| 126 | JsonArray ja = jab.build(); |
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| 127 | out.print(ja); |
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| 128 | } |
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| 129 | session.setAttribute("qpg", qpg); |
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| 130 | } |
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| 131 | /** |
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| 132 | * Handles the HTTP <code>POST</code> method. |
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| 133 | * |
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| 134 | * @param request servlet request |
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| 135 | * @param response servlet response |
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| 136 | * @throws ServletException if a servlet-specific error occurs |
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| 137 | * @throws IOException if an I/O error occurs |
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| 138 | */ |
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| 139 | @Override |
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| 140 | protected void doPost(HttpServletRequest request, HttpServletResponse response) |
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| 141 | throws ServletException, IOException { |
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| 142 | processRequest(request, response); |
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| 143 | } |
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| 144 | |
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| 145 | /** |
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| 146 | * Returns a short description of the servlet. |
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| 147 | * |
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| 148 | * @return a String containing servlet description |
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| 149 | */ |
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| 150 | @Override |
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| 151 | public String getServletInfo() { |
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| 152 | return "Short description"; |
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| 153 | }// </editor-fold> |
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| 154 | |
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| 155 | } |
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