| 1 | /* |
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| 2 | * To change this license header, choose License Headers in Project Properties. |
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| 3 | * To change this template file, choose Tools | Templates |
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| 4 | * and open the template in the editor. |
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| 5 | */ |
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| 6 | |
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| 7 | package org.biohackathon.SPARQLBuilder.www; |
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| 8 | |
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| 9 | import java.io.IOException; |
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| 10 | import java.io.PrintWriter; |
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| 11 | import java.math.BigDecimal; |
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| 12 | import java.util.*; |
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| 13 | import javax.json.*; |
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| 14 | import javax.servlet.ServletException; |
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| 15 | import javax.servlet.annotation.WebServlet; |
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| 16 | import javax.servlet.http.HttpServlet; |
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| 17 | import javax.servlet.http.HttpServletRequest; |
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| 18 | import javax.servlet.http.HttpServletResponse; |
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| 19 | import javax.servlet.http.HttpSession; |
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| 20 | import org.biohackathon.SPARQLBuilder.OWL.*; |
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| 21 | |
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| 22 | /** |
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| 23 | * |
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| 24 | * @author atsuko |
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| 25 | */ |
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| 26 | @WebServlet(name = "CLServlet", urlPatterns = {"/clist"}) |
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| 27 | public class CLServlet extends HttpServlet { |
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| 28 | |
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| 29 | private static final String FILENAME = "cdata/"; |
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| 30 | |
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| 31 | /** |
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| 32 | * Processes requests for both HTTP <code>GET</code> and <code>POST</code> |
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| 33 | * methods. |
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| 34 | * |
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| 35 | * @param request servlet request |
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| 36 | * @param response servlet response |
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| 37 | * @throws ServletException if a servlet-specific error occurs |
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| 38 | * @throws IOException if an I/O error occurs |
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| 39 | */ |
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| 40 | protected void processRequest(HttpServletRequest request, HttpServletResponse response) |
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| 41 | throws ServletException, IOException { |
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| 42 | response.setContentType("text/html;charset=UTF-8"); |
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| 43 | try (PrintWriter out = response.getWriter()) { |
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| 44 | /* TODO output your page here. You may use following sample code. */ |
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| 45 | out.println("<!DOCTYPE html>"); |
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| 46 | out.println("<html>"); |
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| 47 | out.println("<head>"); |
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| 48 | out.println("<title>Servlet CLServlet</title>"); |
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| 49 | out.println("</head>"); |
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| 50 | out.println("<body>"); |
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| 51 | out.println("<h1>Servlet CLServlet at " + request.getContextPath() + "</h1>"); |
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| 52 | out.println("</body>"); |
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| 53 | out.println("</html>"); |
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| 54 | } |
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| 55 | } |
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| 56 | |
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| 57 | // <editor-fold defaultstate="collapsed" desc="HttpServlet methods. Click on the + sign on the left to edit the code."> |
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| 58 | /** |
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| 59 | * Handles the HTTP <code>GET</code> method. |
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| 60 | * |
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| 61 | * @param request servlet request |
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| 62 | * @param response servlet response |
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| 63 | * @throws ServletException if a servlet-specific error occurs |
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| 64 | * @throws IOException if an I/O error occurs |
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| 65 | */ |
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| 66 | @Override |
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| 67 | protected void doGet(HttpServletRequest request, HttpServletResponse response) |
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| 68 | throws ServletException, IOException { |
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| 69 | //processRequest(request, response); |
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| 70 | response.setContentType("application/json;charset=UTF-8"); |
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| 71 | response.setHeader("Access-Control-Allow-Origin", "*"); |
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| 72 | response.setHeader("Access-Control-Allow-Methods", "GET"); |
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| 73 | response.setHeader("Access-Control-Allow-Headers", request.getHeader("Access-Control-Request-Headers")); |
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| 74 | response.setHeader("Access-Control-Max-Age", "-1"); |
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| 75 | PrintWriter out = response.getWriter(); |
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| 76 | String ep = request.getParameter("ep"); |
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| 77 | String classURI = request.getParameter("class"); |
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| 78 | |
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| 79 | HttpSession session = request.getSession(); |
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| 80 | QueryPathGenerator qpg = (QueryPathGenerator)session.getAttribute("qpg"); |
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| 81 | SortedSet<String> sortedClasses = null; |
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| 82 | SClass[] classes = null; |
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| 83 | JsonBuilderFactory jbfactory = Json.createBuilderFactory(null); |
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| 84 | JsonObjectBuilder job = jbfactory.createObjectBuilder(); |
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| 85 | JsonArray ja = null; |
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| 86 | |
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| 87 | if ( qpg == null ){ |
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| 88 | qpg = new QueryPathGenerator(); |
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| 89 | } |
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| 90 | if ( classURI == null ){ |
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| 91 | try{ |
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| 92 | classes = qpg.getClasses(); |
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| 93 | }catch(Exception e){ |
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| 94 | System.err.println(e); |
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| 95 | } |
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| 96 | }else{ |
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| 97 | //classes = qpg.getAdjclasses(classURI); |
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| 98 | } |
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| 99 | sortedClasses = qpg.getSortedClasses(classes); |
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| 100 | ja = getJsonArrayFromSortedClasses(jbfactory, sortedClasses); |
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| 101 | out.print(ja); |
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| 102 | } |
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| 103 | |
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| 104 | /** |
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| 105 | * Handles the HTTP <code>POST</code> method. |
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| 106 | * |
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| 107 | * @param request servlet request |
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| 108 | * @param response servlet response |
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| 109 | * @throws ServletException if a servlet-specific error occurs |
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| 110 | * @throws IOException if an I/O error occurs |
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| 111 | */ |
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| 112 | @Override |
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| 113 | protected void doPost(HttpServletRequest request, HttpServletResponse response) |
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| 114 | throws ServletException, IOException { |
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| 115 | processRequest(request, response); |
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| 116 | } |
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| 117 | |
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| 118 | /** |
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| 119 | * Returns a short description of the servlet. |
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| 120 | * |
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| 121 | * @return a String containing servlet description |
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| 122 | */ |
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| 123 | @Override |
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| 124 | public String getServletInfo() { |
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| 125 | return "Short description"; |
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| 126 | }// </editor-fold> |
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| 127 | |
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| 128 | private JsonArray getJsonArrayFromSortedClasses(JsonBuilderFactory jbfactory, SortedSet<String> sortedClasses){ |
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| 129 | JsonArrayBuilder jab = jbfactory.createArrayBuilder(); |
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| 130 | Iterator<String> cit = sortedClasses.iterator(); |
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| 131 | List<String> tmpclasses = new LinkedList<String>(); |
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| 132 | JsonObjectBuilder job = jbfactory.createObjectBuilder(); |
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| 133 | while( cit.hasNext() ){ |
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| 134 | String classinfo = cit.next(); |
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| 135 | String[] data = classinfo.split("\t"); |
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| 136 | if (data.length != 3 ){ |
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| 137 | System.out.println("data is wrong?"); |
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| 138 | } |
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| 139 | if (data[0].matches("^[0-9]*$")){ |
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| 140 | tmpclasses.add(classinfo); |
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| 141 | }else{ |
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| 142 | job.add("uri", data[2]); |
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| 143 | job.add("label", data[0]); |
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| 144 | job.add("number", data[1]); |
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| 145 | jab.add(job); |
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| 146 | } |
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| 147 | } |
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| 148 | cit = tmpclasses.iterator(); |
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| 149 | while( cit.hasNext() ){ |
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| 150 | String classinfo = cit.next(); |
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| 151 | String[] data = classinfo.split("\t"); |
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| 152 | if (data.length != 3 ){ |
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| 153 | System.out.println("data is wrong?"); |
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| 154 | } |
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| 155 | job.add("uri", data[2]); |
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| 156 | job.add("label", data[0]); |
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| 157 | job.add("number", data[1]); |
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| 158 | jab.add(job); |
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| 159 | } |
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| 160 | JsonArray ja = jab.build(); |
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| 161 | return ja; |
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| 162 | } |
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| 163 | } |
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