チェンジセット 173 : SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/OWLClassGraph.java

更新日時:

2014/09/26 10:09:41 (10 年 前)

更新者:

atsuko

ログメッセージ:

bug fix

ファイル:

• SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/OWLClassGraph.java (変更) (4 diff)

SPARQLBuilderWWW/src/java/org/biohackathon/SPARQLBuilder/OWL/OWLClassGraph.java

@@ -26 +26 @@
         ClassLink classLink;
         List<ClassLink> path;
-        boolean converge;
+        //boolean converge;
         
         public LinkAndPath(ClassLink classLink, List<ClassLink> path){
            this.classLink = classLink;
            this.path = path;
-           this.converge = false;
-        }
-        
-        public LinkAndPath(ClassLink classLink, List<ClassLink> path, String originalClassURI, boolean converge){
+           //this.converge = false;
+        }
+        
+        public LinkAndPath(ClassLink classLink, List<ClassLink> path, String originalClassURI){
            this.classLink = classLink;
            this.path = path;
            this.originalClassURI = originalClassURI;
-           this.converge = converge;
+           //this.converge = converge;
         }
     }
@@ -87 +87 @@
         List<List<ClassLink>> paths = new ArrayList<>();
         List<LinkAndPath> lp = new LinkedList<>();
-        lp.add(new LinkAndPath(new ClassLink("",startClass,null,Direction.both,0,0,0,0,0,false,false), new LinkedList<ClassLink>(), "", false));
+        lp.add(new LinkAndPath(new ClassLink("",startClass,null,Direction.both,0,0,0,0,0,false,false), new LinkedList<ClassLink>(), ""));
         try{
           for ( int i = 0; i < nsteps; i++ ){
@@ -94 +94 @@
               while ( lit.hasNext() ){
                   LinkAndPath crrlp = lit.next();
+                  /*if ( crrlp.classLink.getLinkedClassURI().equals("http://www.biopax.org/release/biopax-level3.owl#Pathway") ){
+                      System.out.println("here!");
+                  }*/
                   ClassLink[] classLinks = rdfsa.getNextClass(null, crrlp.classLink.getLinkedClassURI(), limit, countLinks);
                   for ( int j = 0 ; j < classLinks.length; j++ ){
+                      /*if ( classLinks[j].getLinkedClassURI().endsWith("http://www.biopax.org/release/biopax-level3.owl#BiochemicalReaction") ){
+                          ClassLink cltmp = classLinks[j];
+                      }*/
                       List<ClassLink> crrpath = new LinkedList<>(crrlp.path);
                       crrpath.add(classLinks[j]);
@@ -118 +124 @@
                           }
                       }
-                      
-                      nextlp.add(new LinkAndPath(classLinks[j], crrpath, crrlp.classLink.getLinkedClassURI(), false));
+                      /*
+                      if ( classLinks[j].getDirection() != Direction.reverse ){
+                         System.out.println("here b"); 
+                      }*/
+
+                      nextlp.add(new LinkAndPath(classLinks[j], crrpath, crrlp.classLink.getLinkedClassURI()));
                   }
               }