Mulgara 配置
Load Performance
Allie upload
About 89 mins
PDBJ upload
The file includes the characteristics like ABSA_(A2) that can not be dealt with by Mulgara. 2012-01-17 10:10:49,066 WARN [main] itql.TqlSession?? - Couldn't execute command org.mulgara.query.QueryException??: Unable to load file:/opt/services/togordf/data/pdbj/XML/10gs-noatom.rdf.gz into rmi://localhost/Pdbj#pdbj: Illegal character in path at index 60: http://pdbj.org/rdf/10GS/pdbx_struct_assembly_prop/1,ABSA_(A^2)
Uniprot upload
2012-07-12 03:20:25,512 WARN [main] itql.TqlSession? - Couldn't execute command org.mulgara.query.QueryException?: Unable to load file:/opt/services/togordf/data/uniprot/uniprotgz/uniprot.rdf.gz into rollback: Unexpected XAException:Cannot send res.rollback:javax.transaction.xa.XAException (error code = -3) --null
at org.mulgara.resolver.DatabaseSession?.execute(DatabaseSession?.java:746) at org.mulgara.resolver.DatabaseSession?.setModel(DatabaseSession?.java:580) at org.mulgara.server.rmi.SessionWrapperRemoteSession?.setModel(SessionWrapperRemoteSession?.java:126) at sun.reflect.NativeMethodAccessorImpl?.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl?.invoke(NativeMethodAccessorImpl?.java:39) at sun.reflect.DelegatingMethodAccessorImpl?.invoke(DelegatingMethodAccessorImpl?.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at sun.rmi.server.UnicastServerRef?.dispatch(UnicastServerRef?.java:305)
DDBJ upload
2012-07-06 23:54:59,770 WARN [main] itql.TqlSession? - Couldn't execute command org.mulgara.query.QueryException?: Unable to load file:/opt/services/togordf/data/ddbj/ddbj_release/ddbjbct3.rdf.gz into rmi://localhost/ddbj#ddbj: Exception on rollback:java.rmi.RemoteException: rollb ack: Unexpected XAException:Cannot send res.rollback:javax.transaction.xa.XAException (error code = -3) --null
at org.mulgara.resolver.DatabaseSession?.execute(DatabaseSession?.java:746) at org.mulgara.resolver.DatabaseSession?.setModel(DatabaseSession?.java:580)
| loadtime | Cell Cycle Ontology | Allie |
| 1st time | 10mins | 89mins |
| 2nd time | 9mins | 83mins |
| average | 10mins | 86mins |
Sparql query performance
Cell Cycle query
| Query\time(ms) | time 1 | time 2 | time 3 | time 4 | time 5 |
| case1 | 1299 | 1293 | 1290 | 1297 | 1297 |
| case2 | 27 | 26 | 18 | 17 | 17 |
| case3 | 2211 | 2221 | 2202 | 2207 | 2207 |
| case4 | 10 | 9 | 10 | 9 | 9 |
| case5 | 369 | 332 | 347 | 347 | 347 |
| case6 | 2353 | 2319 | 2358 | 2314 | 2314 |
| case7 | 39 | 31 | 34 | 32 | 32 |
| case8 | 59 | 65 | 67 | 54 | 54 |
| case9 | 39 | 33 | 36 | 32 | 32 |
| case10 | 5 | 4 | 5 | 4 | 4 |
| case11 | 14 | 14 | 15 | 14 | 14 |
| case12 | X | X | X | X | X |
| case13 | 8 | 9 | 8 | 9 | 9 |
| case14 | 6 | 6 | 6 | 6 | 6 |
| case15 | X | X | X | X | X |
| case16 | X | X | X | X | X |
| case17 | X | X | X | X | X |
| case18 | X | X | X | X | X |
| case19 | 34 | 41 | 41 | 39 | 39 |
Case 12: "Exception in thread ""main"" org.mulgara.query.QueryException?: Query failed: Unknown ConstraintExpression? type: class org.mulgara.query.ConstraintFalse? known types: [class org.mulgara.resolver.relational.RelationalConstraint?, class org.mulgara.query.ConstraintFilter?, class org.mulgara.resolver.xsd.IntervalConstraint?, class org.mulgara.query.WalkConstraint?, class org.mulgara.query.SingleTransitiveConstraint?, class org.mulgara.query.ConstraintIn?, class org.mulgara.query.ConstraintOptionalJoin?, class org.mulgara.query.ConstraintAssignment?, class org.mulgara.resolver.lucene.LuceneConstraint?, class org.mulgara.query.ConstraintConjunction?, class org.mulgara.query.ConstraintDifference?, class org.mulgara.query.ConstraintImpl?, class org.mulgara.query.ConstraintDisjunction?, class org.mulgara.query.TransitiveConstraint?, class org.mulgara.query.ConstraintIs?]"
Case 16,17 &18: Exception in thread "main" org.mulgara.parser.MulgaraParserException?: Encountered "count" at line
Case 15: Showing 0 results(some unsupported function caused the wrong query result)
Allie query
| Query\time(ms) | time 1 | time 2 | time 3 | time 4 | time 5 |
| case1 | 375 | 377 | 373 | 376 | 368 |
| case2 | 123 | 123 | 119 | 120 | 128 |
| case3 | X | X | X | X | X |
| case4 | X | X | X | X | X |
| case5 | X | X | X | X | X |
As for case3,4&5: Exception in thread "main" org.mulgara.parser.MulgaraParserException?: Unable to support arbitrarily complex ORDER BY clause
