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チェンジセット 2 : galaxy-central/tools

更新日時:

2010/10/22 13:23:16 (15 年前)

更新者:

hatakeyama

ログメッセージ:

import galaxy-central

パス:

ファイル:

: 730 追加

. (追加)
tools (追加)
tools/annotation_profiler (追加)
tools/annotation_profiler/annotation_profiler.xml (追加)
tools/annotation_profiler/annotation_profiler_for_interval.py (追加)
tools/data_destination (追加)
tools/data_destination/epigraph.xml (追加)
tools/data_destination/epigraph_test.xml (追加)
tools/data_source (追加)
tools/data_source/access_libraries.xml (追加)
tools/data_source/bed_convert.xml (追加)
tools/data_source/biomart.xml (追加)
tools/data_source/biomart_test.xml (追加)
tools/data_source/bx_browser.xml (追加)
tools/data_source/cbi_rice_mart.xml (追加)
tools/data_source/data_source.py (追加)
tools/data_source/echo.py (追加)
tools/data_source/echo.xml (追加)
tools/data_source/encode_db.xml (追加)
tools/data_source/epigraph_import.xml (追加)
tools/data_source/epigraph_import_test.xml (追加)
tools/data_source/eupathdb.xml (追加)
tools/data_source/fetch.py (追加)
tools/data_source/fly_modencode.xml (追加)
tools/data_source/flymine.xml (追加)
tools/data_source/flymine_test.xml (追加)
tools/data_source/genbank.py (追加)
tools/data_source/genbank.xml (追加)
tools/data_source/gramene_mart.xml (追加)
tools/data_source/hbvar.xml (追加)
tools/data_source/hbvar_filter.py (追加)
tools/data_source/import.py (追加)
tools/data_source/import.xml (追加)
tools/data_source/microbial_import.py (追加)
tools/data_source/microbial_import.xml (追加)
tools/data_source/microbial_import_code.py (追加)
tools/data_source/modmine.xml (追加)
tools/data_source/ratmine.xml (追加)
tools/data_source/ucsc_archaea.xml (追加)
tools/data_source/ucsc_filter.py (追加)
tools/data_source/ucsc_proxy.py (追加)
tools/data_source/ucsc_proxy.xml (追加)
tools/data_source/ucsc_tablebrowser.xml (追加)
tools/data_source/ucsc_tablebrowser_archaea.xml (追加)
tools/data_source/ucsc_tablebrowser_test.xml (追加)
tools/data_source/ucsc_testproxy.xml (追加)
tools/data_source/upload.py (追加)
tools/data_source/upload.xml (追加)
tools/data_source/worm_modencode.xml (追加)
tools/data_source/wormbase.xml (追加)
tools/data_source/wormbase_test.xml (追加)
tools/discreteWavelet (追加)
tools/discreteWavelet/execute_dwt_IvC_all.pl (追加)
tools/discreteWavelet/execute_dwt_IvC_all.xml (追加)
tools/discreteWavelet/execute_dwt_cor_aVa_perClass.pl (追加)
tools/discreteWavelet/execute_dwt_cor_aVa_perClass.xml (追加)
tools/discreteWavelet/execute_dwt_cor_aVb_all.pl (追加)
tools/discreteWavelet/execute_dwt_cor_aVb_all.xml (追加)
tools/discreteWavelet/execute_dwt_var_perClass.pl (追加)
tools/discreteWavelet/execute_dwt_var_perClass.xml (追加)
tools/emboss_5 (追加)
tools/emboss_5/emboss_antigenic.xml (追加)
tools/emboss_5/emboss_backtranseq.xml (追加)
tools/emboss_5/emboss_banana.pl (追加)
tools/emboss_5/emboss_banana.xml (追加)
tools/emboss_5/emboss_biosed.xml (追加)
tools/emboss_5/emboss_btwisted.xml (追加)
tools/emboss_5/emboss_cai.xml (追加)
tools/emboss_5/emboss_cai_custom.xml (追加)
tools/emboss_5/emboss_chaos.xml (追加)
tools/emboss_5/emboss_charge.xml (追加)
tools/emboss_5/emboss_checktrans.xml (追加)
tools/emboss_5/emboss_chips.xml (追加)
tools/emboss_5/emboss_cirdna.xml (追加)
tools/emboss_5/emboss_codcmp.xml (追加)
tools/emboss_5/emboss_coderet.xml (追加)
tools/emboss_5/emboss_compseq.xml (追加)
tools/emboss_5/emboss_cpgplot.xml (追加)
tools/emboss_5/emboss_cpgplot_wrapper.pl (追加)
tools/emboss_5/emboss_cpgreport.xml (追加)
tools/emboss_5/emboss_cusp.xml (追加)
tools/emboss_5/emboss_cutseq.xml (追加)
tools/emboss_5/emboss_dan.xml (追加)
tools/emboss_5/emboss_degapseq.xml (追加)
tools/emboss_5/emboss_descseq.xml (追加)
tools/emboss_5/emboss_diffseq.xml (追加)
tools/emboss_5/emboss_digest.xml (追加)
tools/emboss_5/emboss_dotmatcher.xml (追加)
tools/emboss_5/emboss_dotpath.xml (追加)
tools/emboss_5/emboss_dottup.xml (追加)
tools/emboss_5/emboss_dreg.xml (追加)
tools/emboss_5/emboss_einverted.xml (追加)
tools/emboss_5/emboss_epestfind.xml (追加)
tools/emboss_5/emboss_equicktandem.xml (追加)
tools/emboss_5/emboss_est2genome.xml (追加)
tools/emboss_5/emboss_etandem.xml (追加)
tools/emboss_5/emboss_extractfeat.xml (追加)
tools/emboss_5/emboss_extractseq.xml (追加)
tools/emboss_5/emboss_format_corrector.py (追加)
tools/emboss_5/emboss_freak.xml (追加)
tools/emboss_5/emboss_fuzznuc.xml (追加)
tools/emboss_5/emboss_fuzzpro.xml (追加)
tools/emboss_5/emboss_fuzztran.xml (追加)
tools/emboss_5/emboss_garnier.xml (追加)
tools/emboss_5/emboss_geecee.xml (追加)
tools/emboss_5/emboss_getorf.xml (追加)
tools/emboss_5/emboss_helixturnhelix.xml (追加)
tools/emboss_5/emboss_hmoment.xml (追加)
tools/emboss_5/emboss_iep.xml (追加)
tools/emboss_5/emboss_infoseq.xml (追加)
tools/emboss_5/emboss_infoseq_wrapper.pl (追加)
tools/emboss_5/emboss_isochore.xml (追加)
tools/emboss_5/emboss_lindna.xml (追加)
tools/emboss_5/emboss_marscan.xml (追加)
tools/emboss_5/emboss_maskfeat.xml (追加)
tools/emboss_5/emboss_maskseq.xml (追加)
tools/emboss_5/emboss_matcher.xml (追加)
tools/emboss_5/emboss_megamerger.xml (追加)
tools/emboss_5/emboss_merger.xml (追加)
tools/emboss_5/emboss_msbar.xml (追加)
tools/emboss_5/emboss_multiple_outputfile_wrapper.pl (追加)
tools/emboss_5/emboss_needle.xml (追加)
tools/emboss_5/emboss_newcpgreport.xml (追加)
tools/emboss_5/emboss_newcpgseek.xml (追加)
tools/emboss_5/emboss_newseq.xml (追加)
tools/emboss_5/emboss_noreturn.xml (追加)
tools/emboss_5/emboss_notseq.xml (追加)
tools/emboss_5/emboss_nthseq.xml (追加)
tools/emboss_5/emboss_octanol.xml (追加)
tools/emboss_5/emboss_oddcomp.xml (追加)
tools/emboss_5/emboss_palindrome.xml (追加)
tools/emboss_5/emboss_pasteseq.xml (追加)
tools/emboss_5/emboss_patmatdb.xml (追加)
tools/emboss_5/emboss_pepcoil.xml (追加)
tools/emboss_5/emboss_pepinfo.xml (追加)
tools/emboss_5/emboss_pepnet.xml (追加)
tools/emboss_5/emboss_pepstats.xml (追加)
tools/emboss_5/emboss_pepwheel.xml (追加)
tools/emboss_5/emboss_pepwindow.xml (追加)
tools/emboss_5/emboss_pepwindowall.xml (追加)
tools/emboss_5/emboss_plotcon.xml (追加)
tools/emboss_5/emboss_plotorf.xml (追加)
tools/emboss_5/emboss_polydot.xml (追加)
tools/emboss_5/emboss_preg.xml (追加)
tools/emboss_5/emboss_prettyplot.xml (追加)
tools/emboss_5/emboss_prettyseq.xml (追加)
tools/emboss_5/emboss_primersearch.xml (追加)
tools/emboss_5/emboss_revseq.xml (追加)
tools/emboss_5/emboss_seqmatchall.xml (追加)
tools/emboss_5/emboss_seqret.xml (追加)
tools/emboss_5/emboss_showfeat.xml (追加)
tools/emboss_5/emboss_shuffleseq.xml (追加)
tools/emboss_5/emboss_sigcleave.xml (追加)
tools/emboss_5/emboss_single_outputfile_wrapper.pl (追加)
tools/emboss_5/emboss_sirna.xml (追加)
tools/emboss_5/emboss_sixpack.xml (追加)
tools/emboss_5/emboss_skipseq.xml (追加)
tools/emboss_5/emboss_splitter.xml (追加)
tools/emboss_5/emboss_supermatcher.xml (追加)
tools/emboss_5/emboss_syco.xml (追加)
tools/emboss_5/emboss_tcode.xml (追加)
tools/emboss_5/emboss_textsearch.xml (追加)
tools/emboss_5/emboss_tmap.xml (追加)
tools/emboss_5/emboss_tranalign.xml (追加)
tools/emboss_5/emboss_transeq.xml (追加)
tools/emboss_5/emboss_trimest.xml (追加)
tools/emboss_5/emboss_trimseq.xml (追加)
tools/emboss_5/emboss_twofeat.xml (追加)
tools/emboss_5/emboss_union.xml (追加)
tools/emboss_5/emboss_vectorstrip.xml (追加)
tools/emboss_5/emboss_water.xml (追加)
tools/emboss_5/emboss_wobble.xml (追加)
tools/emboss_5/emboss_wordcount.xml (追加)
tools/emboss_5/emboss_wordmatch.xml (追加)
tools/encode (追加)
tools/encode/gencode_partition.xml (追加)
tools/encode/random_intervals.xml (追加)
tools/encode/random_intervals_no_bits.py (追加)
tools/encode/split_by_partitions.py (追加)
tools/evolution (追加)
tools/evolution/add_scores.xml (追加)
tools/evolution/codingSnps.pl (追加)
tools/evolution/codingSnps.xml (追加)
tools/evolution/codingSnps_filter.py (追加)
tools/evolution/mutate_snp_codon.py (追加)
tools/evolution/mutate_snp_codon.xml (追加)
tools/extract (追加)
tools/extract/extract_genomic_dna.py (追加)
tools/extract/extract_genomic_dna.xml (追加)
tools/extract/liftOver_wrapper.py (追加)
tools/extract/liftOver_wrapper.xml (追加)
tools/extract/phastOdds (追加)
tools/extract/phastOdds/get_scores_galaxy.py (追加)
tools/extract/phastOdds/phastOdds_tool.xml (追加)
tools/fasta_tools (追加)
tools/fasta_tools/fasta_compute_length.py (追加)
tools/fasta_tools/fasta_compute_length.xml (追加)
tools/fasta_tools/fasta_concatenate_by_species.py (追加)
tools/fasta_tools/fasta_concatenate_by_species.xml (追加)
tools/fasta_tools/fasta_filter_by_length.py (追加)
tools/fasta_tools/fasta_filter_by_length.xml (追加)
tools/fasta_tools/fasta_to_tabular.py (追加)
tools/fasta_tools/fasta_to_tabular.xml (追加)
tools/fasta_tools/tabular_to_fasta.py (追加)
tools/fasta_tools/tabular_to_fasta.xml (追加)
tools/fastq (追加)
tools/fastq/fastq_combiner.py (追加)
tools/fastq/fastq_combiner.xml (追加)
tools/fastq/fastq_filter.py (追加)
tools/fastq/fastq_filter.xml (追加)
tools/fastq/fastq_groomer.py (追加)
tools/fastq/fastq_groomer.xml (追加)
tools/fastq/fastq_manipulation.py (追加)
tools/fastq/fastq_manipulation.xml (追加)
tools/fastq/fastq_masker_by_quality.py (追加)
tools/fastq/fastq_masker_by_quality.xml (追加)
tools/fastq/fastq_paired_end_joiner.py (追加)
tools/fastq/fastq_paired_end_joiner.xml (追加)
tools/fastq/fastq_paired_end_splitter.py (追加)
tools/fastq/fastq_paired_end_splitter.xml (追加)
tools/fastq/fastq_stats.py (追加)
tools/fastq/fastq_stats.xml (追加)
tools/fastq/fastq_to_fasta.py (追加)
tools/fastq/fastq_to_fasta.xml (追加)
tools/fastq/fastq_to_tabular.py (追加)
tools/fastq/fastq_to_tabular.xml (追加)
tools/fastq/fastq_trimmer.py (追加)
tools/fastq/fastq_trimmer.xml (追加)
tools/fastq/fastq_trimmer_by_quality.py (追加)
tools/fastq/fastq_trimmer_by_quality.xml (追加)
tools/fastq/tabular_to_fastq.py (追加)
tools/fastq/tabular_to_fastq.xml (追加)
tools/fastx_toolkit (追加)
tools/fastx_toolkit/fasta_clipping_histogram.xml (追加)
tools/fastx_toolkit/fasta_formatter.xml (追加)
tools/fastx_toolkit/fasta_nucleotide_changer.xml (追加)
tools/fastx_toolkit/fastq_quality_boxplot.xml (追加)
tools/fastx_toolkit/fastq_quality_converter.xml (追加)
tools/fastx_toolkit/fastq_quality_filter.xml (追加)
tools/fastx_toolkit/fastq_to_fasta.xml (追加)
tools/fastx_toolkit/fastx_artifacts_filter.xml (追加)
tools/fastx_toolkit/fastx_barcode_splitter.xml (追加)
tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh (追加)
tools/fastx_toolkit/fastx_clipper.xml (追加)
tools/fastx_toolkit/fastx_collapser.xml (追加)
tools/fastx_toolkit/fastx_nucleotides_distribution.xml (追加)
tools/fastx_toolkit/fastx_quality_statistics.xml (追加)
tools/fastx_toolkit/fastx_renamer.xml (追加)
tools/fastx_toolkit/fastx_reverse_complement.xml (追加)
tools/fastx_toolkit/fastx_trimmer.xml (追加)
tools/filters (追加)
tools/filters/CreateInterval.pl (追加)
tools/filters/CreateInterval.xml (追加)
tools/filters/axt_to_concat_fasta.py (追加)
tools/filters/axt_to_concat_fasta.xml (追加)
tools/filters/axt_to_fasta.py (追加)
tools/filters/axt_to_fasta.xml (追加)
tools/filters/axt_to_lav.py (追加)
tools/filters/axt_to_lav.xml (追加)
tools/filters/axt_to_lav_code.py (追加)
tools/filters/bed2gff.xml (追加)
tools/filters/bed_to_gff_converter.py (追加)
tools/filters/catWrapper.py (追加)
tools/filters/catWrapper.xml (追加)
tools/filters/changeCase.pl (追加)
tools/filters/changeCase.xml (追加)
tools/filters/commWrapper.pl (追加)
tools/filters/commWrapper.xml (追加)
tools/filters/compare.xml (追加)
tools/filters/condense_characters.pl (追加)
tools/filters/condense_characters.xml (追加)
tools/filters/convert_characters.pl (追加)
tools/filters/convert_characters.py (追加)
tools/filters/convert_characters.xml (追加)
tools/filters/cutWrapper.pl (追加)
tools/filters/cutWrapper.xml (追加)
tools/filters/fileGrep.xml (追加)
tools/filters/fixedValueColumn.pl (追加)
tools/filters/fixedValueColumn.xml (追加)
tools/filters/gff (追加)
tools/filters/gff/extract_GFF_Features.py (追加)
tools/filters/gff/extract_GFF_Features.xml (追加)
tools/filters/gff/gff_filter_by_attribute.py (追加)
tools/filters/gff/gff_filter_by_attribute.xml (追加)
tools/filters/gff/gff_filter_by_feature_count.py (追加)
tools/filters/gff/gff_filter_by_feature_count.xml (追加)
tools/filters/gff2bed.xml (追加)
tools/filters/gff_to_bed_converter.py (追加)
tools/filters/grep.py (追加)
tools/filters/grep.xml (追加)
tools/filters/gtf2bedgraph.xml (追加)
tools/filters/gtf_to_bedgraph_converter.py (追加)
tools/filters/headWrapper.pl (追加)
tools/filters/headWrapper.xml (追加)
tools/filters/join.py (追加)
tools/filters/joinWrapper.pl (追加)
tools/filters/joinWrapper.py (追加)
tools/filters/joiner.xml (追加)
tools/filters/joiner2.xml (追加)
tools/filters/lav_to_bed.py (追加)
tools/filters/lav_to_bed.xml (追加)
tools/filters/lav_to_bed_code.py (追加)
tools/filters/mergeCols.py (追加)
tools/filters/mergeCols.xml (追加)
tools/filters/pasteWrapper.pl (追加)
tools/filters/pasteWrapper.xml (追加)
tools/filters/randomlines.py (追加)
tools/filters/randomlines.xml (追加)
tools/filters/remove_beginning.pl (追加)
tools/filters/remove_beginning.xml (追加)
tools/filters/sff_extract.py (追加)
tools/filters/sff_extractor.xml (追加)
tools/filters/sorter.py (追加)
tools/filters/sorter.xml (追加)
tools/filters/tailWrapper.pl (追加)
tools/filters/tailWrapper.xml (追加)
tools/filters/trimmer.py (追加)
tools/filters/trimmer.xml (追加)
tools/filters/ucsc_gene_bed_to_exon_bed.py (追加)
tools/filters/ucsc_gene_bed_to_exon_bed.xml (追加)
tools/filters/ucsc_gene_bed_to_intron_bed.py (追加)
tools/filters/ucsc_gene_bed_to_intron_bed.xml (追加)
tools/filters/ucsc_gene_table_to_intervals.py (追加)
tools/filters/ucsc_gene_table_to_intervals.xml (追加)
tools/filters/uniq.py (追加)
tools/filters/uniq.xml (追加)
tools/filters/wig_to_bigwig.xml (追加)
tools/filters/wiggle_to_simple.py (追加)
tools/filters/wiggle_to_simple.xml (追加)
tools/genetrack (追加)
tools/genetrack/genetrack_indexer.py (追加)
tools/genetrack/genetrack_indexer.xml (追加)
tools/genetrack/genetrack_peak_prediction.py (追加)
tools/genetrack/genetrack_peak_prediction.xml (追加)
tools/human_genome_variation (追加)
tools/human_genome_variation/BEAM2_wrapper.sh (追加)
tools/human_genome_variation/beam.xml (追加)
tools/human_genome_variation/ctd.pl (追加)
tools/human_genome_variation/ctd.xml (追加)
tools/human_genome_variation/disease_ontology_gene_fuzzy_selector.pl (追加)
tools/human_genome_variation/funDo.xml (追加)
tools/human_genome_variation/gpass.pl (追加)
tools/human_genome_variation/gpass.xml (追加)
tools/human_genome_variation/hilbertvis.sh (追加)
tools/human_genome_variation/hilbertvis.xml (追加)
tools/human_genome_variation/ldtools.xml (追加)
tools/human_genome_variation/ldtools_wrapper.sh (追加)
tools/human_genome_variation/linkToDavid.pl (追加)
tools/human_genome_variation/linkToDavid.xml (追加)
tools/human_genome_variation/linkToGProfile.pl (追加)
tools/human_genome_variation/linkToGProfile.xml (追加)
tools/human_genome_variation/lped_to_geno.pl (追加)
tools/human_genome_variation/lps.xml (追加)
tools/human_genome_variation/lps_tool_wrapper.sh (追加)
tools/human_genome_variation/mergeSnps.pl (追加)
tools/human_genome_variation/pagetag.py (追加)
tools/human_genome_variation/pass.xml (追加)
tools/human_genome_variation/pass_wrapper.sh (追加)
tools/human_genome_variation/senatag.py (追加)
tools/human_genome_variation/sift.xml (追加)
tools/human_genome_variation/sift_variants_wrapper.sh (追加)
tools/human_genome_variation/snpFreq.xml (追加)
tools/human_genome_variation/snpFreq2.pl (追加)
tools/hyphy (追加)
tools/hyphy/hyphy_branch_lengths_wrapper.py (追加)
tools/hyphy/hyphy_branch_lengths_wrapper.xml (追加)
tools/hyphy/hyphy_dnds_wrapper.py (追加)
tools/hyphy/hyphy_dnds_wrapper.xml (追加)
tools/hyphy/hyphy_nj_tree_wrapper.py (追加)
tools/hyphy/hyphy_nj_tree_wrapper.xml (追加)
tools/indels (追加)
tools/indels/indel_analysis.py (追加)
tools/indels/indel_analysis.xml (追加)
tools/indels/indel_sam2interval.py (追加)
tools/indels/indel_sam2interval.xml (追加)
tools/indels/indel_table.py (追加)
tools/indels/indel_table.xml (追加)
tools/indels/sam_indel_filter.py (追加)
tools/indels/sam_indel_filter.xml (追加)
tools/maf (追加)
tools/maf/genebed_maf_to_fasta.xml (追加)
tools/maf/interval2maf.py (追加)
tools/maf/interval2maf.xml (追加)
tools/maf/interval2maf_pairwise.xml (追加)
tools/maf/interval_maf_to_merged_fasta.py (追加)
tools/maf/interval_maf_to_merged_fasta.xml (追加)
tools/maf/maf_by_block_number.py (追加)
tools/maf/maf_by_block_number.xml (追加)
tools/maf/maf_filter.py (追加)
tools/maf/maf_filter.xml (追加)
tools/maf/maf_limit_size.py (追加)
tools/maf/maf_limit_size.xml (追加)
tools/maf/maf_limit_to_species.py (追加)
tools/maf/maf_limit_to_species.xml (追加)
tools/maf/maf_reverse_complement.py (追加)
tools/maf/maf_reverse_complement.xml (追加)
tools/maf/maf_split_by_species.py (追加)
tools/maf/maf_split_by_species.xml (追加)
tools/maf/maf_stats.py (追加)
tools/maf/maf_stats.xml (追加)
tools/maf/maf_thread_for_species.py (追加)
tools/maf/maf_thread_for_species.xml (追加)
tools/maf/maf_to_bed.py (追加)
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tools/maf/maf_to_interval.py (追加)
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tools/metag_tools/blat_mapping.py (追加)
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tools/metag_tools/convert_SOLiD_color2nuc.py (追加)
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tools/metag_tools/fastqsolexa_to_fasta_qual.py (追加)
tools/metag_tools/fastqsolexa_to_fasta_qual.xml (追加)
tools/metag_tools/mapping_to_ucsc.py (追加)
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tools/regVariation/linear_regression.py (追加)
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tools/rgenetics/rgCaCo.py (追加)
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tools/rgenetics/rgEigPCA.py (追加)
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tools/rgenetics/rgfakePed.py (追加)
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tools/rgenetics/rgtest.sh (追加)
tools/rgenetics/rgtest_one_tool.sh (追加)
tools/rgenetics/rgutils.py (追加)
tools/samtools (追加)
tools/samtools/bam_to_sam.py (追加)
tools/samtools/bam_to_sam.xml (追加)
tools/samtools/pileup_interval.py (追加)
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tools/samtools/sam_to_bam.py (追加)
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tools/solid_tools/qualsolid_boxplot_graph.sh (追加)
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tools/stats (追加)
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tools/stats/aggregate_scores_in_intervals.py (追加)
tools/stats/column_maker.py (追加)
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tools/stats/cor.py (追加)
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tools/stats/r_wrapper.sh (追加)
tools/stats/wiggle_to_simple.py (追加)
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tools/taxonomy (追加)
tools/taxonomy/find_diag_hits.py (追加)
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tools/taxonomy/gi2taxonomy.py (追加)
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tools/taxonomy/lca.py (追加)
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tools/visualization/build_ucsc_custom_track.xml (追加)
tools/visualization/build_ucsc_custom_track_code.py (追加)

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