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2
:
galaxy-central/lib/galaxy
更新日時:
2010/10/22 13:23:16 (
14 年
前)
更新者:
hatakeyama
ログメッセージ:
import galaxy-central
パス:
galaxy-central
ファイル:
380 追加
.
(追加)
lib
(追加)
lib/galaxy
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lib/galaxy/__init__.py
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lib/galaxy/app.py
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lib/galaxy/config.py
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lib/galaxy/datatypes
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lib/galaxy/datatypes/__init__.py
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lib/galaxy/datatypes/assembly.py
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lib/galaxy/datatypes/binary.py
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lib/galaxy/datatypes/chrominfo.py
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lib/galaxy/datatypes/converters
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lib/galaxy/datatypes/converters/bam_to_bai.xml
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lib/galaxy/datatypes/converters/bam_to_summary_tree_converter.py
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lib/galaxy/datatypes/converters/bam_to_summary_tree_converter.xml
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lib/galaxy/datatypes/converters/bed_to_genetrack_converter.py
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lib/galaxy/datatypes/converters/bed_to_genetrack_converter.xml
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lib/galaxy/datatypes/converters/bed_to_gff_converter.py
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lib/galaxy/datatypes/converters/bed_to_gff_converter.xml
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lib/galaxy/datatypes/converters/bed_to_interval_index_converter.xml
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lib/galaxy/datatypes/converters/bed_to_summary_tree_converter.xml
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lib/galaxy/datatypes/converters/bedgraph_to_array_tree_converter.py
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lib/galaxy/datatypes/converters/bedgraph_to_array_tree_converter.xml
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lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml
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lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml
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lib/galaxy/datatypes/converters/fasta_to_tabular_converter.py
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lib/galaxy/datatypes/converters/fasta_to_tabular_converter.xml
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lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py
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lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml
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lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py
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lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml
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lib/galaxy/datatypes/converters/gff_to_bed_converter.py
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lib/galaxy/datatypes/converters/gff_to_bed_converter.xml
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lib/galaxy/datatypes/converters/gff_to_interval_index_converter.xml
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lib/galaxy/datatypes/converters/gff_to_summary_tree_converter.xml
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lib/galaxy/datatypes/converters/interval_to_bed12_converter.xml
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lib/galaxy/datatypes/converters/interval_to_bed6_converter.xml
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lib/galaxy/datatypes/converters/interval_to_bed_converter.py
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lib/galaxy/datatypes/converters/interval_to_bed_converter.xml
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lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py
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lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.xml
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lib/galaxy/datatypes/converters/interval_to_coverage.py
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lib/galaxy/datatypes/converters/interval_to_coverage.xml
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lib/galaxy/datatypes/converters/interval_to_interval_index_converter.py
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lib/galaxy/datatypes/converters/interval_to_summary_tree_converter.py
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lib/galaxy/datatypes/converters/lped_to_fped_converter.py
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lib/galaxy/datatypes/converters/lped_to_fped_converter.xml
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lib/galaxy/datatypes/converters/lped_to_pbed_converter.py
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lib/galaxy/datatypes/converters/lped_to_pbed_converter.xml
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lib/galaxy/datatypes/converters/maf_to_fasta_converter.py
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lib/galaxy/datatypes/converters/maf_to_fasta_converter.xml
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lib/galaxy/datatypes/converters/maf_to_interval_converter.py
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lib/galaxy/datatypes/converters/maf_to_interval_converter.xml
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lib/galaxy/datatypes/converters/pbed_ldreduced_converter.py
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lib/galaxy/datatypes/converters/pbed_ldreduced_converter.xml
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lib/galaxy/datatypes/converters/pbed_to_lped_converter.py
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lib/galaxy/datatypes/converters/pbed_to_lped_converter.xml
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lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.py
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lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.xml
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lib/galaxy/datatypes/converters/vcf_to_summary_tree_converter.py
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lib/galaxy/datatypes/converters/vcf_to_summary_tree_converter.xml
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lib/galaxy/datatypes/converters/wiggle_to_array_tree_converter.py
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lib/galaxy/datatypes/converters/wiggle_to_array_tree_converter.xml
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lib/galaxy/datatypes/converters/wiggle_to_simple_converter.py
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lib/galaxy/datatypes/converters/wiggle_to_simple_converter.xml
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lib/galaxy/datatypes/coverage.py
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lib/galaxy/datatypes/data.py
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lib/galaxy/datatypes/display_applications
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lib/galaxy/datatypes/display_applications/__init__.py
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lib/galaxy/datatypes/display_applications/application.py
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lib/galaxy/datatypes/display_applications/parameters.py
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lib/galaxy/datatypes/display_applications/util.py
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lib/galaxy/datatypes/genetics.py
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lib/galaxy/datatypes/images.py
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lib/galaxy/datatypes/indexers
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lib/galaxy/datatypes/indexers/coverage.py
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lib/galaxy/datatypes/indexers/coverage.xml
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lib/galaxy/datatypes/indexers/interval.awk
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lib/galaxy/datatypes/indexers/interval.py
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lib/galaxy/datatypes/indexers/interval.xml
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lib/galaxy/datatypes/indexers/interval_awk.xml
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lib/galaxy/datatypes/indexers/wiggle.py
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lib/galaxy/datatypes/indexers/wiggle.xml
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lib/galaxy/datatypes/interval.py
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lib/galaxy/datatypes/metadata.py
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lib/galaxy/datatypes/ngsindex.py
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lib/galaxy/datatypes/qualityscore.py
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lib/galaxy/datatypes/registry.py
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lib/galaxy/datatypes/sequence.py
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lib/galaxy/datatypes/sniff.py
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lib/galaxy/datatypes/tabular.py
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lib/galaxy/datatypes/test
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lib/galaxy/datatypes/test/1.bam
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lib/galaxy/datatypes/test/1.bed
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lib/galaxy/datatypes/test/1.fastq
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lib/galaxy/datatypes/test/1.fastqsanger
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lib/galaxy/datatypes/test/1.fastqsolexa
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lib/galaxy/datatypes/test/1.sam
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lib/galaxy/datatypes/test/1.sff
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lib/galaxy/datatypes/test/10col.pileup
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lib/galaxy/datatypes/test/2.fastq
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lib/galaxy/datatypes/test/2.fastqsanger
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lib/galaxy/datatypes/test/2.fastqsolexa
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lib/galaxy/datatypes/test/3.bam
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lib/galaxy/datatypes/test/4.bed
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lib/galaxy/datatypes/test/6col.pileup
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lib/galaxy/datatypes/test/alignment.axt
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lib/galaxy/datatypes/test/alignment.lav
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lib/galaxy/datatypes/test/complete.bed
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lib/galaxy/datatypes/test/file.html
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lib/galaxy/datatypes/test/gff_version_3.gff
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lib/galaxy/datatypes/test/interval.interval
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lib/galaxy/datatypes/test/interval1.bed
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lib/galaxy/datatypes/test/megablast_xml_parser_test1.blastxml
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lib/galaxy/datatypes/test/sequence.csfasta
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lib/galaxy/datatypes/test/sequence.fasta
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lib/galaxy/datatypes/test/sequence.maf
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lib/galaxy/datatypes/test/sequence.qual
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lib/galaxy/datatypes/test/sequence.qual454
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lib/galaxy/datatypes/test/sequence.qualsolid
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lib/galaxy/datatypes/test/temp.txt
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lib/galaxy/datatypes/test/test.gff
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lib/galaxy/datatypes/test/test.gtf
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lib/galaxy/datatypes/test/test_ensembl.tab
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lib/galaxy/datatypes/test/test_space.txt
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lib/galaxy/datatypes/test/test_tab.bed
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lib/galaxy/datatypes/test/test_tab1.tabular
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lib/galaxy/datatypes/test/ucsc.customtrack
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lib/galaxy/datatypes/test/wiggle.wig
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lib/galaxy/datatypes/tracks.py
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lib/galaxy/datatypes/xml.py
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lib/galaxy/eggs
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lib/galaxy/eggs/__init__.py
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lib/galaxy/eggs/dist.py
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lib/galaxy/eggs/scramble.py
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lib/galaxy/jobs
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lib/galaxy/jobs/__init__.py
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lib/galaxy/jobs/actions
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lib/galaxy/jobs/actions/__init__.py
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lib/galaxy/jobs/actions/post.py
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lib/galaxy/jobs/runners
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lib/galaxy/jobs/runners/__init__.py
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lib/galaxy/jobs/runners/drmaa.py
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lib/galaxy/jobs/runners/local.py
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lib/galaxy/jobs/runners/pbs.py
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lib/galaxy/jobs/runners/sge.py
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lib/galaxy/model
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lib/galaxy/model/__init__.py
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lib/galaxy/model/custom_types.py
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lib/galaxy/model/item_attrs.py
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lib/galaxy/model/mapping.py
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lib/galaxy/model/mapping_tests.py
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lib/galaxy/model/migrate
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lib/galaxy/model/migrate/__init__.py
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lib/galaxy/model/migrate/check.py
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lib/galaxy/model/migrate/migrate.cfg
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lib/galaxy/model/migrate/versions
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lib/galaxy/model/migrate/versions/0001_initial_tables.py
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lib/galaxy/model/migrate/versions/0002_metadata_file_table.py
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lib/galaxy/model/migrate/versions/0003_security_and_libraries.py
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lib/galaxy/model/migrate/versions/0004_indexes_and_defaults.py
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lib/galaxy/model/migrate/versions/0005_cleanup_datasets_fix.py
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lib/galaxy/model/migrate/versions/0006_change_qual_datatype.py
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lib/galaxy/model/migrate/versions/0007_sharing_histories.py
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lib/galaxy/model/migrate/versions/0008_galaxy_forms.py
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lib/galaxy/model/migrate/versions/0009_request_table.py
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lib/galaxy/model/migrate/versions/0010_hda_display_at_authz_table.py
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lib/galaxy/model/migrate/versions/0011_v0010_mysql_index_fix.py
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lib/galaxy/model/migrate/versions/0012_user_address.py
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lib/galaxy/model/migrate/versions/0013_change_lib_item_templates_to_forms.py
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lib/galaxy/model/migrate/versions/0014_pages.py
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lib/galaxy/model/migrate/versions/0015_tagging.py
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lib/galaxy/model/migrate/versions/0016_v0015_mysql_index_fix.py
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lib/galaxy/model/migrate/versions/0017_library_item_indexes.py
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lib/galaxy/model/migrate/versions/0018_ordered_tags_and_page_tags.py
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lib/galaxy/model/migrate/versions/0019_request_library_folder.py
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lib/galaxy/model/migrate/versions/0020_library_upload_job.py
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lib/galaxy/model/migrate/versions/0021_user_prefs.py
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lib/galaxy/model/migrate/versions/0022_visualization_tables.py
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lib/galaxy/model/migrate/versions/0023_page_published_and_deleted_columns.py
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lib/galaxy/model/migrate/versions/0024_page_slug_unique_constraint.py
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lib/galaxy/model/migrate/versions/0025_user_info.py
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lib/galaxy/model/migrate/versions/0026_cloud_tables.py
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lib/galaxy/model/migrate/versions/0027_request_events.py
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lib/galaxy/model/migrate/versions/0028_external_metadata_file_override.py
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lib/galaxy/model/migrate/versions/0029_user_actions.py
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lib/galaxy/model/migrate/versions/0030_history_slug_column.py
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lib/galaxy/model/migrate/versions/0031_community_and_workflow_tags.py
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lib/galaxy/model/migrate/versions/0032_stored_workflow_slug_column.py
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lib/galaxy/model/migrate/versions/0033_published_cols_for_histories_and_workflows.py
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lib/galaxy/model/migrate/versions/0034_page_user_share_association.py
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lib/galaxy/model/migrate/versions/0035_item_annotations_and_workflow_step_tags.py
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lib/galaxy/model/migrate/versions/0036_add_deleted_column_to_library_template_assoc_tables.py
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lib/galaxy/model/migrate/versions/0037_samples_library.py
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lib/galaxy/model/migrate/versions/0038_add_inheritable_column_to_library_template_assoc_tables.py
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lib/galaxy/model/migrate/versions/0039_add_synopsis_column_to_library_table.py
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lib/galaxy/model/migrate/versions/0040_page_annotations.py
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lib/galaxy/model/migrate/versions/0041_workflow_invocation.py
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lib/galaxy/model/migrate/versions/0042_workflow_invocation_fix.py
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lib/galaxy/model/migrate/versions/0043_visualization_sharing_tagging_annotating.py
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lib/galaxy/model/migrate/versions/0044_add_notify_column_to_request_table.py
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lib/galaxy/model/migrate/versions/0045_request_type_permissions_table.py
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lib/galaxy/model/migrate/versions/0046_post_job_actions.py
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lib/galaxy/model/migrate/versions/0047_job_table_user_id_column.py
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lib/galaxy/model/migrate/versions/0048_dataset_instance_state_column.py
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lib/galaxy/model/migrate/versions/0049_api_keys_table.py
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lib/galaxy/model/migrate/versions/0050_drop_cloud_tables.py
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lib/galaxy/model/migrate/versions/0051_imported_col_for_jobs_table.py
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lib/galaxy/model/migrate/versions/0052_sample_dataset_table.py
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lib/galaxy/model/migrate/versions/0053_item_ratings.py
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lib/galaxy/model/migrate/versions/0054_visualization_dbkey.py
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lib/galaxy/model/migrate/versions/0055_add_pja_assoc_for_jobs.py
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lib/galaxy/model/migrate/versions/0056_workflow_outputs.py
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lib/galaxy/model/migrate/versions/0057_request_notify.py
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lib/galaxy/model/migrate/versions/0058_history_import_export.py
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lib/galaxy/model/migrate/versions/0059_sample_dataset_file_path.py
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lib/galaxy/model/orm
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lib/galaxy/model/orm/__init__.py
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lib/galaxy/model/orm/ext
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lib/galaxy/model/orm/ext/__init__.py
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lib/galaxy/model/orm/ext/assignmapper.py
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lib/galaxy/model/orm/logging_connection_proxy.py
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lib/galaxy/security
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lib/galaxy/security/__init__.py
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lib/galaxy/tags
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lib/galaxy/tags/__init__.py
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lib/galaxy/tags/tag_handler.py
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lib/galaxy/tools
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lib/galaxy/tools/__init__.py
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lib/galaxy/tools/actions
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lib/galaxy/tools/actions/__init__.py
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lib/galaxy/tools/actions/history_imp_exp.py
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lib/galaxy/tools/actions/metadata.py
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lib/galaxy/tools/actions/upload.py
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lib/galaxy/tools/actions/upload_common.py
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lib/galaxy/tools/data
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lib/galaxy/tools/data/__init__.py
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lib/galaxy/tools/deps
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lib/galaxy/tools/deps/__init__.py
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lib/galaxy/tools/deps/tests.py
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lib/galaxy/tools/exception_handling.py
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lib/galaxy/tools/imp_exp
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lib/galaxy/tools/imp_exp/__init__.py
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lib/galaxy/tools/imp_exp/export_history.py
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lib/galaxy/tools/parameters
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lib/galaxy/tools/parameters/__init__.py
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lib/galaxy/tools/parameters/basic.py
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lib/galaxy/tools/parameters/dynamic_options.py
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lib/galaxy/tools/parameters/grouping.py
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lib/galaxy/tools/parameters/input_translation.py
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lib/galaxy/tools/parameters/output.py
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lib/galaxy/tools/parameters/sanitize.py
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lib/galaxy/tools/parameters/validation.py
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lib/galaxy/tools/search
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lib/galaxy/tools/search/__init__.py
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lib/galaxy/tools/test.py
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lib/galaxy/tools/util
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lib/galaxy/tools/util/__init__.py
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lib/galaxy/tools/util/galaxyops
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lib/galaxy/tools/util/galaxyops/__init__.py
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lib/galaxy/tools/util/gff_util.py
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lib/galaxy/tools/util/hyphy_util.py
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lib/galaxy/tools/util/maf_utilities.py
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lib/galaxy/util
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lib/galaxy/util/__init__.py
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lib/galaxy/util/aliaspickler.py
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lib/galaxy/util/bunch.py
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lib/galaxy/util/docutils_ext
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lib/galaxy/util/docutils_ext/__init__.py
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lib/galaxy/util/docutils_ext/htmlfrag.py
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lib/galaxy/util/expressions.py
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lib/galaxy/util/hash_util.py
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lib/galaxy/util/heartbeat.py
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lib/galaxy/util/json.py
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lib/galaxy/util/lrucache.py
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lib/galaxy/util/memdump.py
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lib/galaxy/util/none_like.py
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lib/galaxy/util/odict.py
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lib/galaxy/util/sanitize_html.py
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lib/galaxy/util/streamball.py
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lib/galaxy/util/template.py
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lib/galaxy/util/topsort.py
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lib/galaxy/visualization
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lib/galaxy/visualization/__init__.py
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lib/galaxy/visualization/tracks
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lib/galaxy/visualization/tracks/__init__.py
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lib/galaxy/visualization/tracks/data_providers.py
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lib/galaxy/visualization/tracks/summary.py
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lib/galaxy/web
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lib/galaxy/web/__init__.py
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lib/galaxy/web/api
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lib/galaxy/web/api/__init__.py
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lib/galaxy/web/api/contents.py
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lib/galaxy/web/api/libraries.py
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lib/galaxy/web/base
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lib/galaxy/web/base/__init__.py
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lib/galaxy/web/base/controller.py
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lib/galaxy/web/buildapp.py
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lib/galaxy/web/controllers
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lib/galaxy/web/controllers/__init__.py
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lib/galaxy/web/controllers/admin.py
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lib/galaxy/web/controllers/async.py
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lib/galaxy/web/controllers/dataset.py
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lib/galaxy/web/controllers/error.py
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lib/galaxy/web/controllers/forms.py
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lib/galaxy/web/controllers/history.py
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lib/galaxy/web/controllers/library.py
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lib/galaxy/web/controllers/library_admin.py
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lib/galaxy/web/controllers/library_common.py
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lib/galaxy/web/controllers/mobile.py
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lib/galaxy/web/controllers/page.py
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lib/galaxy/web/controllers/requests.py
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lib/galaxy/web/controllers/requests_admin.py
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lib/galaxy/web/controllers/requests_common.py
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lib/galaxy/web/controllers/root.py
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lib/galaxy/web/controllers/tag.py
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lib/galaxy/web/controllers/tool_runner.py
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lib/galaxy/web/controllers/tracks.py
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lib/galaxy/web/controllers/ucsc_proxy.py
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lib/galaxy/web/controllers/user.py
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lib/galaxy/web/controllers/visualization.py
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lib/galaxy/web/controllers/workflow.py
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lib/galaxy/web/form_builder.py
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lib/galaxy/web/framework
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lib/galaxy/web/framework/__init__.py
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lib/galaxy/web/framework/base.py
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lib/galaxy/web/framework/helpers
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lib/galaxy/web/framework/helpers/__init__.py
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lib/galaxy/web/framework/helpers/grids.py
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lib/galaxy/web/framework/middleware
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lib/galaxy/web/framework/middleware/__init__.py
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lib/galaxy/web/framework/middleware/profile.py
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lib/galaxy/web/framework/middleware/remoteuser.py
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lib/galaxy/web/framework/middleware/static.py
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lib/galaxy/web/framework/middleware/translogger.py
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lib/galaxy/web/framework/middleware/xforwardedhost.py
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lib/galaxy/web/security
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lib/galaxy/web/security/__init__.py
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lib/galaxy/webapps
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lib/galaxy/webapps/__init__.py
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lib/galaxy/webapps/community
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lib/galaxy/webapps/community/__init__.py
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lib/galaxy/webapps/community/app.py
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lib/galaxy/webapps/community/buildapp.py
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lib/galaxy/webapps/community/config.py
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lib/galaxy/webapps/community/controllers
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lib/galaxy/webapps/community/controllers/__init__.py
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lib/galaxy/webapps/community/controllers/admin.py
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lib/galaxy/webapps/community/controllers/common.py
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lib/galaxy/webapps/community/controllers/tool.py
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lib/galaxy/webapps/community/controllers/upload.py
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lib/galaxy/webapps/community/datatypes
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lib/galaxy/webapps/community/datatypes/__init__.py
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lib/galaxy/webapps/community/model
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lib/galaxy/webapps/community/model/__init__.py
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lib/galaxy/webapps/community/model/mapping.py
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lib/galaxy/webapps/community/model/migrate
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lib/galaxy/webapps/community/model/migrate/__init__.py
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lib/galaxy/webapps/community/model/migrate/check.py
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lib/galaxy/webapps/community/model/migrate/migrate.cfg
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lib/galaxy/webapps/community/model/migrate/versions
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lib/galaxy/webapps/community/model/migrate/versions/0001_initial_tables.py
(追加)
lib/galaxy/webapps/community/model/migrate/versions/0002_add_tool_suite_column.py
(追加)
lib/galaxy/webapps/community/model/migrate/versions/0003_review_and_review_association_tables.py
(追加)
lib/galaxy/webapps/community/security
(追加)
lib/galaxy/webapps/community/security/__init__.py
(追加)
lib/galaxy/webapps/reports
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lib/galaxy/webapps/reports/__init__.py
(追加)
lib/galaxy/webapps/reports/app.py
(追加)
lib/galaxy/webapps/reports/buildapp.py
(追加)
lib/galaxy/webapps/reports/config.py
(追加)
lib/galaxy/webapps/reports/controllers
(追加)
lib/galaxy/webapps/reports/controllers/__init__.py
(追加)
lib/galaxy/webapps/reports/controllers/jobs.py
(追加)
lib/galaxy/webapps/reports/controllers/root.py
(追加)
lib/galaxy/webapps/reports/controllers/system.py
(追加)
lib/galaxy/webapps/reports/controllers/users.py
(追加)
lib/galaxy/workflow
(追加)
lib/galaxy/workflow/__init__.py
(追加)
lib/galaxy/workflow/modules.py
(追加)
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