Context Navigation

← 前の更新
次の更新 →

チェンジセット 2 : galaxy-central

更新日時:

2010/10/22 13:23:16 (14 年前)

更新者:

hatakeyama

ログメッセージ:

import galaxy-central

パス:

galaxy-central

ファイル:

: 3235 追加

. (追加)
LICENSE.txt (追加)
MANIFEST.in (追加)
Makefile (追加)
README.txt (追加)
buildbot_setup.sh (追加)
community_datatypes_conf.xml.sample (追加)
community_wsgi.ini.sample (追加)
contrib (追加)
contrib/README (追加)
contrib/edu.psu.galaxy.GalaxyServer.plist (追加)
contrib/galaxy.debian-init (追加)
contrib/galaxy.solaris-smf.xml (追加)
contrib/multiproccess.sh (追加)
cron (追加)
cron/README.txt (追加)
cron/add_manual_builds.py (追加)
cron/build_chrom_db.py (追加)
cron/check_galaxy.sh (追加)
cron/cleanup_datasets.py (追加)
cron/parse_builds.py (追加)
cron/parse_builds_3_sites.py (追加)
cron/updateucsc.sh.sample (追加)
database (追加)
database/info.txt (追加)
datatypes_conf.xml.sample (追加)
display_applications (追加)
display_applications/ensembl (追加)
display_applications/ensembl/ensembl_bam.xml (追加)
display_applications/ensembl/ensembl_gff.xml (追加)
display_applications/ensembl/ensembl_interval_as_bed.xml (追加)
display_applications/gbrowse (追加)
display_applications/gbrowse/gbrowse_gff.xml (追加)
display_applications/gbrowse/gbrowse_interval_as_bed.xml (追加)
display_applications/gbrowse/gbrowse_wig.xml (追加)
display_applications/genetrack.xml (追加)
display_applications/ucsc (追加)
display_applications/ucsc/bam.xml (追加)
display_applications/ucsc/bigbed.xml (追加)
display_applications/ucsc/bigwig.xml (追加)
display_applications/ucsc/interval_as_bed.xml (追加)
display_applications/ucsc/maf_customtrack.xml (追加)
dist-eggs.ini (追加)
eggs.ini (追加)
lib (追加)
lib/fpconst.py (追加)
lib/galaxy (追加)
lib/galaxy/__init__.py (追加)
lib/galaxy/app.py (追加)
lib/galaxy/config.py (追加)
lib/galaxy/datatypes (追加)
lib/galaxy/datatypes/__init__.py (追加)
lib/galaxy/datatypes/assembly.py (追加)
lib/galaxy/datatypes/binary.py (追加)
lib/galaxy/datatypes/chrominfo.py (追加)
lib/galaxy/datatypes/converters (追加)
lib/galaxy/datatypes/converters/bam_to_bai.xml (追加)
lib/galaxy/datatypes/converters/bam_to_summary_tree_converter.py (追加)
lib/galaxy/datatypes/converters/bam_to_summary_tree_converter.xml (追加)
lib/galaxy/datatypes/converters/bed_to_genetrack_converter.py (追加)
lib/galaxy/datatypes/converters/bed_to_genetrack_converter.xml (追加)
lib/galaxy/datatypes/converters/bed_to_gff_converter.py (追加)
lib/galaxy/datatypes/converters/bed_to_gff_converter.xml (追加)
lib/galaxy/datatypes/converters/bed_to_interval_index_converter.xml (追加)
lib/galaxy/datatypes/converters/bed_to_summary_tree_converter.xml (追加)
lib/galaxy/datatypes/converters/bedgraph_to_array_tree_converter.py (追加)
lib/galaxy/datatypes/converters/bedgraph_to_array_tree_converter.xml (追加)
lib/galaxy/datatypes/converters/fasta_to_bowtie_base_index_converter.xml (追加)
lib/galaxy/datatypes/converters/fasta_to_bowtie_color_index_converter.xml (追加)
lib/galaxy/datatypes/converters/fasta_to_tabular_converter.py (追加)
lib/galaxy/datatypes/converters/fasta_to_tabular_converter.xml (追加)
lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.py (追加)
lib/galaxy/datatypes/converters/fastqsolexa_to_fasta_converter.xml (追加)
lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.py (追加)
lib/galaxy/datatypes/converters/fastqsolexa_to_qual_converter.xml (追加)
lib/galaxy/datatypes/converters/gff_to_bed_converter.py (追加)
lib/galaxy/datatypes/converters/gff_to_bed_converter.xml (追加)
lib/galaxy/datatypes/converters/gff_to_interval_index_converter.xml (追加)
lib/galaxy/datatypes/converters/gff_to_summary_tree_converter.xml (追加)
lib/galaxy/datatypes/converters/interval_to_bed12_converter.xml (追加)
lib/galaxy/datatypes/converters/interval_to_bed6_converter.xml (追加)
lib/galaxy/datatypes/converters/interval_to_bed_converter.py (追加)
lib/galaxy/datatypes/converters/interval_to_bed_converter.xml (追加)
lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.py (追加)
lib/galaxy/datatypes/converters/interval_to_bedstrict_converter.xml (追加)
lib/galaxy/datatypes/converters/interval_to_coverage.py (追加)
lib/galaxy/datatypes/converters/interval_to_coverage.xml (追加)
lib/galaxy/datatypes/converters/interval_to_interval_index_converter.py (追加)
lib/galaxy/datatypes/converters/interval_to_summary_tree_converter.py (追加)
lib/galaxy/datatypes/converters/lped_to_fped_converter.py (追加)
lib/galaxy/datatypes/converters/lped_to_fped_converter.xml (追加)
lib/galaxy/datatypes/converters/lped_to_pbed_converter.py (追加)
lib/galaxy/datatypes/converters/lped_to_pbed_converter.xml (追加)
lib/galaxy/datatypes/converters/maf_to_fasta_converter.py (追加)
lib/galaxy/datatypes/converters/maf_to_fasta_converter.xml (追加)
lib/galaxy/datatypes/converters/maf_to_interval_converter.py (追加)
lib/galaxy/datatypes/converters/maf_to_interval_converter.xml (追加)
lib/galaxy/datatypes/converters/pbed_ldreduced_converter.py (追加)
lib/galaxy/datatypes/converters/pbed_ldreduced_converter.xml (追加)
lib/galaxy/datatypes/converters/pbed_to_lped_converter.py (追加)
lib/galaxy/datatypes/converters/pbed_to_lped_converter.xml (追加)
lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.py (追加)
lib/galaxy/datatypes/converters/vcf_to_interval_index_converter.xml (追加)
lib/galaxy/datatypes/converters/vcf_to_summary_tree_converter.py (追加)
lib/galaxy/datatypes/converters/vcf_to_summary_tree_converter.xml (追加)
lib/galaxy/datatypes/converters/wiggle_to_array_tree_converter.py (追加)
lib/galaxy/datatypes/converters/wiggle_to_array_tree_converter.xml (追加)
lib/galaxy/datatypes/converters/wiggle_to_simple_converter.py (追加)
lib/galaxy/datatypes/converters/wiggle_to_simple_converter.xml (追加)
lib/galaxy/datatypes/coverage.py (追加)
lib/galaxy/datatypes/data.py (追加)
lib/galaxy/datatypes/display_applications (追加)
lib/galaxy/datatypes/display_applications/__init__.py (追加)
lib/galaxy/datatypes/display_applications/application.py (追加)
lib/galaxy/datatypes/display_applications/parameters.py (追加)
lib/galaxy/datatypes/display_applications/util.py (追加)
lib/galaxy/datatypes/genetics.py (追加)
lib/galaxy/datatypes/images.py (追加)
lib/galaxy/datatypes/indexers (追加)
lib/galaxy/datatypes/indexers/coverage.py (追加)
lib/galaxy/datatypes/indexers/coverage.xml (追加)
lib/galaxy/datatypes/indexers/interval.awk (追加)
lib/galaxy/datatypes/indexers/interval.py (追加)
lib/galaxy/datatypes/indexers/interval.xml (追加)
lib/galaxy/datatypes/indexers/interval_awk.xml (追加)
lib/galaxy/datatypes/indexers/wiggle.py (追加)
lib/galaxy/datatypes/indexers/wiggle.xml (追加)
lib/galaxy/datatypes/interval.py (追加)
lib/galaxy/datatypes/metadata.py (追加)
lib/galaxy/datatypes/ngsindex.py (追加)
lib/galaxy/datatypes/qualityscore.py (追加)
lib/galaxy/datatypes/registry.py (追加)
lib/galaxy/datatypes/sequence.py (追加)
lib/galaxy/datatypes/sniff.py (追加)
lib/galaxy/datatypes/tabular.py (追加)
lib/galaxy/datatypes/test (追加)
lib/galaxy/datatypes/test/1.bam (追加)
lib/galaxy/datatypes/test/1.bed (追加)
lib/galaxy/datatypes/test/1.fastq (追加)
lib/galaxy/datatypes/test/1.fastqsanger (追加)
lib/galaxy/datatypes/test/1.fastqsolexa (追加)
lib/galaxy/datatypes/test/1.sam (追加)
lib/galaxy/datatypes/test/1.sff (追加)
lib/galaxy/datatypes/test/10col.pileup (追加)
lib/galaxy/datatypes/test/2.fastq (追加)
lib/galaxy/datatypes/test/2.fastqsanger (追加)
lib/galaxy/datatypes/test/2.fastqsolexa (追加)
lib/galaxy/datatypes/test/3.bam (追加)
lib/galaxy/datatypes/test/4.bed (追加)
lib/galaxy/datatypes/test/6col.pileup (追加)
lib/galaxy/datatypes/test/alignment.axt (追加)
lib/galaxy/datatypes/test/alignment.lav (追加)
lib/galaxy/datatypes/test/complete.bed (追加)
lib/galaxy/datatypes/test/file.html (追加)
lib/galaxy/datatypes/test/gff_version_3.gff (追加)
lib/galaxy/datatypes/test/interval.interval (追加)
lib/galaxy/datatypes/test/interval1.bed (追加)
lib/galaxy/datatypes/test/megablast_xml_parser_test1.blastxml (追加)
lib/galaxy/datatypes/test/sequence.csfasta (追加)
lib/galaxy/datatypes/test/sequence.fasta (追加)
lib/galaxy/datatypes/test/sequence.maf (追加)
lib/galaxy/datatypes/test/sequence.qual (追加)
lib/galaxy/datatypes/test/sequence.qual454 (追加)
lib/galaxy/datatypes/test/sequence.qualsolid (追加)
lib/galaxy/datatypes/test/temp.txt (追加)
lib/galaxy/datatypes/test/test.gff (追加)
lib/galaxy/datatypes/test/test.gtf (追加)
lib/galaxy/datatypes/test/test_ensembl.tab (追加)
lib/galaxy/datatypes/test/test_space.txt (追加)
lib/galaxy/datatypes/test/test_tab.bed (追加)
lib/galaxy/datatypes/test/test_tab1.tabular (追加)
lib/galaxy/datatypes/test/ucsc.customtrack (追加)
lib/galaxy/datatypes/test/wiggle.wig (追加)
lib/galaxy/datatypes/tracks.py (追加)
lib/galaxy/datatypes/xml.py (追加)
lib/galaxy/eggs (追加)
lib/galaxy/eggs/__init__.py (追加)
lib/galaxy/eggs/dist.py (追加)
lib/galaxy/eggs/scramble.py (追加)
lib/galaxy/jobs (追加)
lib/galaxy/jobs/__init__.py (追加)
lib/galaxy/jobs/actions (追加)
lib/galaxy/jobs/actions/__init__.py (追加)
lib/galaxy/jobs/actions/post.py (追加)
lib/galaxy/jobs/runners (追加)
lib/galaxy/jobs/runners/__init__.py (追加)
lib/galaxy/jobs/runners/drmaa.py (追加)
lib/galaxy/jobs/runners/local.py (追加)
lib/galaxy/jobs/runners/pbs.py (追加)
lib/galaxy/jobs/runners/sge.py (追加)
lib/galaxy/model (追加)
lib/galaxy/model/__init__.py (追加)
lib/galaxy/model/custom_types.py (追加)
lib/galaxy/model/item_attrs.py (追加)
lib/galaxy/model/mapping.py (追加)
lib/galaxy/model/mapping_tests.py (追加)
lib/galaxy/model/migrate (追加)
lib/galaxy/model/migrate/__init__.py (追加)
lib/galaxy/model/migrate/check.py (追加)
lib/galaxy/model/migrate/migrate.cfg (追加)
lib/galaxy/model/migrate/versions (追加)
lib/galaxy/model/migrate/versions/0001_initial_tables.py (追加)
lib/galaxy/model/migrate/versions/0002_metadata_file_table.py (追加)
lib/galaxy/model/migrate/versions/0003_security_and_libraries.py (追加)
lib/galaxy/model/migrate/versions/0004_indexes_and_defaults.py (追加)
lib/galaxy/model/migrate/versions/0005_cleanup_datasets_fix.py (追加)
lib/galaxy/model/migrate/versions/0006_change_qual_datatype.py (追加)
lib/galaxy/model/migrate/versions/0007_sharing_histories.py (追加)
lib/galaxy/model/migrate/versions/0008_galaxy_forms.py (追加)
lib/galaxy/model/migrate/versions/0009_request_table.py (追加)
lib/galaxy/model/migrate/versions/0010_hda_display_at_authz_table.py (追加)
lib/galaxy/model/migrate/versions/0011_v0010_mysql_index_fix.py (追加)
lib/galaxy/model/migrate/versions/0012_user_address.py (追加)
lib/galaxy/model/migrate/versions/0013_change_lib_item_templates_to_forms.py (追加)
lib/galaxy/model/migrate/versions/0014_pages.py (追加)
lib/galaxy/model/migrate/versions/0015_tagging.py (追加)
lib/galaxy/model/migrate/versions/0016_v0015_mysql_index_fix.py (追加)
lib/galaxy/model/migrate/versions/0017_library_item_indexes.py (追加)
lib/galaxy/model/migrate/versions/0018_ordered_tags_and_page_tags.py (追加)
lib/galaxy/model/migrate/versions/0019_request_library_folder.py (追加)
lib/galaxy/model/migrate/versions/0020_library_upload_job.py (追加)
lib/galaxy/model/migrate/versions/0021_user_prefs.py (追加)
lib/galaxy/model/migrate/versions/0022_visualization_tables.py (追加)
lib/galaxy/model/migrate/versions/0023_page_published_and_deleted_columns.py (追加)
lib/galaxy/model/migrate/versions/0024_page_slug_unique_constraint.py (追加)
lib/galaxy/model/migrate/versions/0025_user_info.py (追加)
lib/galaxy/model/migrate/versions/0026_cloud_tables.py (追加)
lib/galaxy/model/migrate/versions/0027_request_events.py (追加)
lib/galaxy/model/migrate/versions/0028_external_metadata_file_override.py (追加)
lib/galaxy/model/migrate/versions/0029_user_actions.py (追加)
lib/galaxy/model/migrate/versions/0030_history_slug_column.py (追加)
lib/galaxy/model/migrate/versions/0031_community_and_workflow_tags.py (追加)
lib/galaxy/model/migrate/versions/0032_stored_workflow_slug_column.py (追加)
lib/galaxy/model/migrate/versions/0033_published_cols_for_histories_and_workflows.py (追加)
lib/galaxy/model/migrate/versions/0034_page_user_share_association.py (追加)
lib/galaxy/model/migrate/versions/0035_item_annotations_and_workflow_step_tags.py (追加)
lib/galaxy/model/migrate/versions/0036_add_deleted_column_to_library_template_assoc_tables.py (追加)
lib/galaxy/model/migrate/versions/0037_samples_library.py (追加)
lib/galaxy/model/migrate/versions/0038_add_inheritable_column_to_library_template_assoc_tables.py (追加)
lib/galaxy/model/migrate/versions/0039_add_synopsis_column_to_library_table.py (追加)
lib/galaxy/model/migrate/versions/0040_page_annotations.py (追加)
lib/galaxy/model/migrate/versions/0041_workflow_invocation.py (追加)
lib/galaxy/model/migrate/versions/0042_workflow_invocation_fix.py (追加)
lib/galaxy/model/migrate/versions/0043_visualization_sharing_tagging_annotating.py (追加)
lib/galaxy/model/migrate/versions/0044_add_notify_column_to_request_table.py (追加)
lib/galaxy/model/migrate/versions/0045_request_type_permissions_table.py (追加)
lib/galaxy/model/migrate/versions/0046_post_job_actions.py (追加)
lib/galaxy/model/migrate/versions/0047_job_table_user_id_column.py (追加)
lib/galaxy/model/migrate/versions/0048_dataset_instance_state_column.py (追加)
lib/galaxy/model/migrate/versions/0049_api_keys_table.py (追加)
lib/galaxy/model/migrate/versions/0050_drop_cloud_tables.py (追加)
lib/galaxy/model/migrate/versions/0051_imported_col_for_jobs_table.py (追加)
lib/galaxy/model/migrate/versions/0052_sample_dataset_table.py (追加)
lib/galaxy/model/migrate/versions/0053_item_ratings.py (追加)
lib/galaxy/model/migrate/versions/0054_visualization_dbkey.py (追加)
lib/galaxy/model/migrate/versions/0055_add_pja_assoc_for_jobs.py (追加)
lib/galaxy/model/migrate/versions/0056_workflow_outputs.py (追加)
lib/galaxy/model/migrate/versions/0057_request_notify.py (追加)
lib/galaxy/model/migrate/versions/0058_history_import_export.py (追加)
lib/galaxy/model/migrate/versions/0059_sample_dataset_file_path.py (追加)
lib/galaxy/model/orm (追加)
lib/galaxy/model/orm/__init__.py (追加)
lib/galaxy/model/orm/ext (追加)
lib/galaxy/model/orm/ext/__init__.py (追加)
lib/galaxy/model/orm/ext/assignmapper.py (追加)
lib/galaxy/model/orm/logging_connection_proxy.py (追加)
lib/galaxy/security (追加)
lib/galaxy/security/__init__.py (追加)
lib/galaxy/tags (追加)
lib/galaxy/tags/__init__.py (追加)
lib/galaxy/tags/tag_handler.py (追加)
lib/galaxy/tools (追加)
lib/galaxy/tools/__init__.py (追加)
lib/galaxy/tools/actions (追加)
lib/galaxy/tools/actions/__init__.py (追加)
lib/galaxy/tools/actions/history_imp_exp.py (追加)
lib/galaxy/tools/actions/metadata.py (追加)
lib/galaxy/tools/actions/upload.py (追加)
lib/galaxy/tools/actions/upload_common.py (追加)
lib/galaxy/tools/data (追加)
lib/galaxy/tools/data/__init__.py (追加)
lib/galaxy/tools/deps (追加)
lib/galaxy/tools/deps/__init__.py (追加)
lib/galaxy/tools/deps/tests.py (追加)
lib/galaxy/tools/exception_handling.py (追加)
lib/galaxy/tools/imp_exp (追加)
lib/galaxy/tools/imp_exp/__init__.py (追加)
lib/galaxy/tools/imp_exp/export_history.py (追加)
lib/galaxy/tools/parameters (追加)
lib/galaxy/tools/parameters/__init__.py (追加)
lib/galaxy/tools/parameters/basic.py (追加)
lib/galaxy/tools/parameters/dynamic_options.py (追加)
lib/galaxy/tools/parameters/grouping.py (追加)
lib/galaxy/tools/parameters/input_translation.py (追加)
lib/galaxy/tools/parameters/output.py (追加)
lib/galaxy/tools/parameters/sanitize.py (追加)
lib/galaxy/tools/parameters/validation.py (追加)
lib/galaxy/tools/search (追加)
lib/galaxy/tools/search/__init__.py (追加)
lib/galaxy/tools/test.py (追加)
lib/galaxy/tools/util (追加)
lib/galaxy/tools/util/__init__.py (追加)
lib/galaxy/tools/util/galaxyops (追加)
lib/galaxy/tools/util/galaxyops/__init__.py (追加)
lib/galaxy/tools/util/gff_util.py (追加)
lib/galaxy/tools/util/hyphy_util.py (追加)
lib/galaxy/tools/util/maf_utilities.py (追加)
lib/galaxy/util (追加)
lib/galaxy/util/__init__.py (追加)
lib/galaxy/util/aliaspickler.py (追加)
lib/galaxy/util/bunch.py (追加)
lib/galaxy/util/docutils_ext (追加)
lib/galaxy/util/docutils_ext/__init__.py (追加)
lib/galaxy/util/docutils_ext/htmlfrag.py (追加)
lib/galaxy/util/expressions.py (追加)
lib/galaxy/util/hash_util.py (追加)
lib/galaxy/util/heartbeat.py (追加)
lib/galaxy/util/json.py (追加)
lib/galaxy/util/lrucache.py (追加)
lib/galaxy/util/memdump.py (追加)
lib/galaxy/util/none_like.py (追加)
lib/galaxy/util/odict.py (追加)
lib/galaxy/util/sanitize_html.py (追加)
lib/galaxy/util/streamball.py (追加)
lib/galaxy/util/template.py (追加)
lib/galaxy/util/topsort.py (追加)
lib/galaxy/visualization (追加)
lib/galaxy/visualization/__init__.py (追加)
lib/galaxy/visualization/tracks (追加)
lib/galaxy/visualization/tracks/__init__.py (追加)
lib/galaxy/visualization/tracks/data_providers.py (追加)
lib/galaxy/visualization/tracks/summary.py (追加)
lib/galaxy/web (追加)
lib/galaxy/web/__init__.py (追加)
lib/galaxy/web/api (追加)
lib/galaxy/web/api/__init__.py (追加)
lib/galaxy/web/api/contents.py (追加)
lib/galaxy/web/api/libraries.py (追加)
lib/galaxy/web/base (追加)
lib/galaxy/web/base/__init__.py (追加)
lib/galaxy/web/base/controller.py (追加)
lib/galaxy/web/buildapp.py (追加)
lib/galaxy/web/controllers (追加)
lib/galaxy/web/controllers/__init__.py (追加)
lib/galaxy/web/controllers/admin.py (追加)
lib/galaxy/web/controllers/async.py (追加)
lib/galaxy/web/controllers/dataset.py (追加)
lib/galaxy/web/controllers/error.py (追加)
lib/galaxy/web/controllers/forms.py (追加)
lib/galaxy/web/controllers/history.py (追加)
lib/galaxy/web/controllers/library.py (追加)
lib/galaxy/web/controllers/library_admin.py (追加)
lib/galaxy/web/controllers/library_common.py (追加)
lib/galaxy/web/controllers/mobile.py (追加)
lib/galaxy/web/controllers/page.py (追加)
lib/galaxy/web/controllers/requests.py (追加)
lib/galaxy/web/controllers/requests_admin.py (追加)
lib/galaxy/web/controllers/requests_common.py (追加)
lib/galaxy/web/controllers/root.py (追加)
lib/galaxy/web/controllers/tag.py (追加)
lib/galaxy/web/controllers/tool_runner.py (追加)
lib/galaxy/web/controllers/tracks.py (追加)
lib/galaxy/web/controllers/ucsc_proxy.py (追加)
lib/galaxy/web/controllers/user.py (追加)
lib/galaxy/web/controllers/visualization.py (追加)
lib/galaxy/web/controllers/workflow.py (追加)
lib/galaxy/web/form_builder.py (追加)
lib/galaxy/web/framework (追加)
lib/galaxy/web/framework/__init__.py (追加)
lib/galaxy/web/framework/base.py (追加)
lib/galaxy/web/framework/helpers (追加)
lib/galaxy/web/framework/helpers/__init__.py (追加)
lib/galaxy/web/framework/helpers/grids.py (追加)
lib/galaxy/web/framework/middleware (追加)
lib/galaxy/web/framework/middleware/__init__.py (追加)
lib/galaxy/web/framework/middleware/profile.py (追加)
lib/galaxy/web/framework/middleware/remoteuser.py (追加)
lib/galaxy/web/framework/middleware/static.py (追加)
lib/galaxy/web/framework/middleware/translogger.py (追加)
lib/galaxy/web/framework/middleware/xforwardedhost.py (追加)
lib/galaxy/web/security (追加)
lib/galaxy/web/security/__init__.py (追加)
lib/galaxy/webapps (追加)
lib/galaxy/webapps/__init__.py (追加)
lib/galaxy/webapps/community (追加)
lib/galaxy/webapps/community/__init__.py (追加)
lib/galaxy/webapps/community/app.py (追加)
lib/galaxy/webapps/community/buildapp.py (追加)
lib/galaxy/webapps/community/config.py (追加)
lib/galaxy/webapps/community/controllers (追加)
lib/galaxy/webapps/community/controllers/__init__.py (追加)
lib/galaxy/webapps/community/controllers/admin.py (追加)
lib/galaxy/webapps/community/controllers/common.py (追加)
lib/galaxy/webapps/community/controllers/tool.py (追加)
lib/galaxy/webapps/community/controllers/upload.py (追加)
lib/galaxy/webapps/community/datatypes (追加)
lib/galaxy/webapps/community/datatypes/__init__.py (追加)
lib/galaxy/webapps/community/model (追加)
lib/galaxy/webapps/community/model/__init__.py (追加)
lib/galaxy/webapps/community/model/mapping.py (追加)
lib/galaxy/webapps/community/model/migrate (追加)
lib/galaxy/webapps/community/model/migrate/__init__.py (追加)
lib/galaxy/webapps/community/model/migrate/check.py (追加)
lib/galaxy/webapps/community/model/migrate/migrate.cfg (追加)
lib/galaxy/webapps/community/model/migrate/versions (追加)
lib/galaxy/webapps/community/model/migrate/versions/0001_initial_tables.py (追加)
lib/galaxy/webapps/community/model/migrate/versions/0002_add_tool_suite_column.py (追加)
lib/galaxy/webapps/community/model/migrate/versions/0003_review_and_review_association_tables.py (追加)
lib/galaxy/webapps/community/security (追加)
lib/galaxy/webapps/community/security/__init__.py (追加)
lib/galaxy/webapps/reports (追加)
lib/galaxy/webapps/reports/__init__.py (追加)
lib/galaxy/webapps/reports/app.py (追加)
lib/galaxy/webapps/reports/buildapp.py (追加)
lib/galaxy/webapps/reports/config.py (追加)
lib/galaxy/webapps/reports/controllers (追加)
lib/galaxy/webapps/reports/controllers/__init__.py (追加)
lib/galaxy/webapps/reports/controllers/jobs.py (追加)
lib/galaxy/webapps/reports/controllers/root.py (追加)
lib/galaxy/webapps/reports/controllers/system.py (追加)
lib/galaxy/webapps/reports/controllers/users.py (追加)
lib/galaxy/workflow (追加)
lib/galaxy/workflow/__init__.py (追加)
lib/galaxy/workflow/modules.py (追加)
lib/galaxy_utils (追加)
lib/galaxy_utils/__init__.py (追加)
lib/galaxy_utils/sequence (追加)
lib/galaxy_utils/sequence/__init__.py (追加)
lib/galaxy_utils/sequence/fasta.py (追加)
lib/galaxy_utils/sequence/fastq.py (追加)
lib/galaxy_utils/sequence/sequence.py (追加)
lib/galaxy_utils/sequence/transform.py (追加)
lib/galaxy_utils/sequence/vcf.py (追加)
lib/log_tempfile.py (追加)
lib/mimeparse.py (追加)
lib/pkg_resources.py (追加)
lib/psyco_full.py (追加)
locale (追加)
locale/en (追加)
locale/en/LC_MESSAGES (追加)
locale/en/LC_MESSAGES/ginga.mo (追加)
locale/en/LC_MESSAGES/ginga.po (追加)
locale/en/LC_MESSAGES/tools.mo (追加)
locale/en/LC_MESSAGES/tools.po (追加)
locale/ginga.pot (追加)
locale/ja (追加)
locale/ja/LC_MESSAGES (追加)
locale/ja/LC_MESSAGES/ginga.mo (追加)
locale/ja/LC_MESSAGES/ginga.po (追加)
locale/ja/LC_MESSAGES/tools.mo (追加)
locale/ja/LC_MESSAGES/tools.po (追加)
locale/tools.pot (追加)
manage_db.sh (追加)
reports_wsgi.ini.sample (追加)
run.sh (追加)
run_community.sh (追加)
run_functional_tests.sh (追加)
run_galaxy_listener.sh (追加)
run_reports.sh (追加)
run_unit_tests.sh (追加)
scripts (追加)
scripts/api (追加)
scripts/api/README (追加)
scripts/api/common.py (追加)
scripts/api/display.py (追加)
scripts/api/library_create_folder.py (追加)
scripts/api/library_create_library.py (追加)
scripts/api/library_upload_from_import_dir.py (追加)
scripts/check_eggs.py (追加)
scripts/check_galaxy.py (追加)
scripts/check_python.py (追加)
scripts/cleanup_datasets (追加)
scripts/cleanup_datasets/cleanup_datasets.py (追加)
scripts/cleanup_datasets/delete_datasets.sh (追加)
scripts/cleanup_datasets/delete_datasets_main.sh (追加)
scripts/cleanup_datasets/delete_userless_histories.sh (追加)
scripts/cleanup_datasets/delete_userless_histories_main.sh (追加)
scripts/cleanup_datasets/purge_datasets.sh (追加)
scripts/cleanup_datasets/purge_datasets_main.sh (追加)
scripts/cleanup_datasets/purge_folders.sh (追加)
scripts/cleanup_datasets/purge_folders_main.sh (追加)
scripts/cleanup_datasets/purge_histories.sh (追加)
scripts/cleanup_datasets/purge_histories_main.sh (追加)
scripts/cleanup_datasets/purge_libraries.sh (追加)
scripts/cleanup_datasets/purge_libraries_main.sh (追加)
scripts/cleanup_datasets/remove_renamed_datasets_from_disk.py (追加)
scripts/cleanup_datasets/rename_purged_datasets.py (追加)
scripts/cleanup_datasets/update_dataset_size.py (追加)
scripts/cleanup_datasets/update_metadata.py (追加)
scripts/cleanup_datasets/update_metadata.sh (追加)
scripts/dist-scramble.py (追加)
scripts/egg_packager_template.py (追加)
scripts/fetch_eggs.py (追加)
scripts/functional_tests.py (追加)
scripts/galaxy_messaging (追加)
scripts/galaxy_messaging/client (追加)
scripts/galaxy_messaging/client/amqp_publisher.py (追加)
scripts/galaxy_messaging/client/galaxy_amq.ini.sample (追加)
scripts/galaxy_messaging/client/report.bat.sample (追加)
scripts/galaxy_messaging/client/scan.bat.sample (追加)
scripts/galaxy_messaging/client/scan.sh.sample (追加)
scripts/galaxy_messaging/client/scanner.py (追加)
scripts/galaxy_messaging/client/scanner_interface.py (追加)
scripts/galaxy_messaging/server (追加)
scripts/galaxy_messaging/server/amqp_consumer.py (追加)
scripts/galaxy_messaging/server/data_transfer.py (追加)
scripts/galaxy_messaging/server/galaxydb_interface.py (追加)
scripts/galaxy_messaging/server/galaxyweb_interface.py (追加)
scripts/get_platforms.py (追加)
scripts/make_egg_packager.py (追加)
scripts/manage_db.py (追加)
scripts/metagenomics (追加)
scripts/metagenomics/convert_title.py (追加)
scripts/metagenomics/process_BLAST_db.sh (追加)
scripts/microbes (追加)
scripts/microbes/BeautifulSoup.py (追加)
scripts/microbes/README.txt (追加)
scripts/microbes/create_bacteria_loc_file.py (追加)
scripts/microbes/create_bacteria_table.py (追加)
scripts/microbes/create_nib_seq_loc_file.py (追加)
scripts/microbes/get_builds_lengths.py (追加)
scripts/microbes/harvest_bacteria.py (追加)
scripts/microbes/ncbi_to_ucsc.py (追加)
scripts/microbes/util.py (追加)
scripts/nosetests.py (追加)
scripts/others (追加)
scripts/others/incorrect_gops_jobs.py (追加)
scripts/others/incorrect_gops_jobs.sh (追加)
scripts/others/incorrect_gops_join_jobs.py (追加)
scripts/others/incorrect_gops_join_jobs.sh (追加)
scripts/paster.py (追加)
scripts/rst2html.py (追加)
scripts/run_selenium_tests.sh (追加)
scripts/scramble (追加)
scripts/scramble.py (追加)
scripts/scramble/lib (追加)
scripts/scramble/lib/scramble_lib.py (追加)
scripts/scramble/patches (追加)
scripts/scramble/patches/Cheetah (追加)
scripts/scramble/patches/Cheetah/SetupConfig.py (追加)
scripts/scramble/patches/GeneTrack (追加)
scripts/scramble/patches/GeneTrack/setup.py (追加)
scripts/scramble/patches/MySQL_python (追加)
scripts/scramble/patches/MySQL_python/site.cfg (追加)
scripts/scramble/patches/PasteScript (追加)
scripts/scramble/patches/PasteScript/setup.py (追加)
scripts/scramble/scripts (追加)
scripts/scramble/scripts/DRMAA_python-macosx.py (追加)
scripts/scramble/scripts/DRMAA_python-solaris.py (追加)
scripts/scramble/scripts/DRMAA_python.py (追加)
scripts/scramble/scripts/MySQL_python-solaris.py (追加)
scripts/scramble/scripts/MySQL_python.py (追加)
scripts/scramble/scripts/generic.py (追加)
scripts/scramble/scripts/pbs_python.py (追加)
scripts/scramble/scripts/psycopg2-linux.py (追加)
scripts/scramble/scripts/psycopg2-macosx.py (追加)
scripts/scramble/scripts/psycopg2-solaris.py (追加)
scripts/scramble/scripts/psycopg2.py (追加)
scripts/scramble/scripts/pysam-solaris.py (追加)
scripts/scramble/scripts/pysqlite.py (追加)
scripts/set_metadata.py (追加)
scripts/taxonomy (追加)
scripts/taxonomy/gi2tax_test.txt (追加)
scripts/taxonomy/names_test.txt (追加)
scripts/taxonomy/processTaxonomy.sh (追加)
scripts/test_dist_egg.py (追加)
scripts/tools (追加)
scripts/tools/annotation_profiler (追加)
scripts/tools/annotation_profiler/README.txt (追加)
scripts/tools/annotation_profiler/build_profile_indexes.py (追加)
scripts/tools/re_escape_output.py (追加)
scripts/yuicompressor.jar (追加)
set_metadata.sh (追加)
setup.sh (追加)
static (追加)
static/emboss_icons (追加)
static/emboss_icons/isochore.png (追加)
static/fastx_icons (追加)
static/fastx_icons/barcode_splitter_output_example.png (追加)
static/fastx_icons/fasta_clipping_histogram_1.png (追加)
static/fastx_icons/fasta_clipping_histogram_2.png (追加)
static/fastx_icons/fasta_clipping_histogram_3.png (追加)
static/fastx_icons/fasta_clipping_histogram_4.png (追加)
static/fastx_icons/fastq_nucleotides_distribution_1.png (追加)
static/fastx_icons/fastq_nucleotides_distribution_2.png (追加)
static/fastx_icons/fastq_nucleotides_distribution_3.png (追加)
static/fastx_icons/fastq_nucleotides_distribution_4.png (追加)
static/fastx_icons/fastq_quality_boxplot_1.png (追加)
static/fastx_icons/fastq_quality_boxplot_2.png (追加)
static/fastx_icons/fastq_quality_boxplot_3.png (追加)
static/fastx_icons/fastx_clipper_example.png (追加)
static/fastx_icons/fastx_clipper_illustration.png (追加)
static/favicon.ico (追加)
static/formatHelp.html (追加)
static/genetrack (追加)
static/genetrack/genetrack.css (追加)
static/genetrack/genetrack.js (追加)
static/gmaj (追加)
static/gmaj/docs (追加)
static/gmaj/docs/cathy.gmaj.png (追加)
static/gmaj/docs/gmaj.css (追加)
static/gmaj/docs/gmaj_bugs.html (追加)
static/gmaj/docs/gmaj_help.html (追加)
static/gmaj/docs/gmaj_input.html (追加)
static/gmaj/docs/gmaj_install.html (追加)
static/gmaj/docs/gmaj_news.html (追加)
static/gmaj/docs/gmaj_readme.html (追加)
static/gmaj/docs/hand14.gif (追加)
static/gmaj/docs/sample.gmaj (追加)
static/gmaj/gmaj.jar (追加)
static/help.css (追加)
static/help.html (追加)
static/help.rst (追加)
static/images (追加)
static/images/Armitagep_manhattan.png (追加)
static/images/Armitagep_qqplot.png (追加)
static/images/SetAttr.png (追加)
static/images/SetGenome.png (追加)
static/images/add_icon.png (追加)
static/images/add_icon_dark.png (追加)
static/images/aggregate_history1.png (追加)
static/images/aggregate_history2.png (追加)
static/images/bar_chart.png (追加)
static/images/bed_warn.png (追加)
static/images/blat_mapping_example.png (追加)
static/images/brochure.pdf (追加)
static/images/closebox.png (追加)
static/images/dat_points_table_brows_1.png (追加)
static/images/ddarrowsplit.png (追加)
static/images/delete.gif (追加)
static/images/delete_icon.png (追加)
static/images/delete_icon_dark.png (追加)
static/images/delete_tag_icon_gray.png (追加)
static/images/delete_tag_icon_white.png (追加)
static/images/dropdownarrow.png (追加)
static/images/dualcolorcode.png (追加)
static/images/dw.gif (追加)
static/images/eye_icon.png (追加)
static/images/eye_icon_dark.png (追加)
static/images/eye_icon_grey.png (追加)
static/images/fetchTax.png (追加)
static/images/fugue (追加)
static/images/fugue/arrow-090.png (追加)
static/images/fugue/arrow-circle.png (追加)
static/images/fugue/asterisk-small-outline.png (追加)
static/images/fugue/asterisk-small-yellow.png (追加)
static/images/fugue/asterisk-small.png (追加)
static/images/fugue/bug.png (追加)
static/images/fugue/chart.png (追加)
static/images/fugue/chevron-expand.png (追加)
static/images/fugue/chevron.png (追加)
static/images/fugue/control-270.png (追加)
static/images/fugue/cross-button.png (追加)
static/images/fugue/cross.png (追加)
static/images/fugue/disk.png (追加)
static/images/fugue/external.png (追加)
static/images/fugue/eye.png (追加)
static/images/fugue/magnifier-left.png (追加)
static/images/fugue/magnifier-zoom-out.png (追加)
static/images/fugue/magnifier-zoom.png (追加)
static/images/fugue/navigation.png (追加)
static/images/fugue/pencil-small.png (追加)
static/images/fugue/pencil.png (追加)
static/images/fugue/plus-circle.png (追加)
static/images/fugue/sticky-note-text.png (追加)
static/images/fugue/tag--plus.png (追加)
static/images/fugue/tag-label.png (追加)
static/images/fugue/tags.png (追加)
static/images/fugue/toggle-expand.png (追加)
static/images/fugue/toggle.png (追加)
static/images/galaxy.png (追加)
static/images/galaxyIcon_noText.png (追加)
static/images/galaxyLogo_small.png (追加)
static/images/gsummary_out.gif (追加)
static/images/gsummary_out_groups.gif (追加)
static/images/hatch-023858.png (追加)
static/images/hatch-fade-023858.gif (追加)
static/images/hilbertvis1.png (追加)
static/images/hilbertvis2.png (追加)
static/images/hilbertvisDiagram.png (追加)
static/images/histogram.png (追加)
static/images/histogram2.png (追加)
static/images/history.gif (追加)
static/images/history_down_arrow.gif (追加)
static/images/history_up_arrow.gif (追加)
static/images/icon_error_lrg.gif (追加)
static/images/icon_error_sml.gif (追加)
static/images/icon_info_lrg.gif (追加)
static/images/icon_info_sml.gif (追加)
static/images/icon_success_lrg.gif (追加)
static/images/icon_success_sml.gif (追加)
static/images/icon_warning_lrg.gif (追加)
static/images/icon_warning_sml.gif (追加)
static/images/kendall.png (追加)
static/images/light_gray_grid.gif (追加)
static/images/loading_large_white_bg.gif (追加)
static/images/loading_small_white_bg.gif (追加)
static/images/lock.jpg (追加)
static/images/maf_icons (追加)
static/images/maf_icons/interval2maf.png (追加)
static/images/maf_icons/stitchMaf.png (追加)
static/images/mag_glass.png (追加)
static/images/mutation_visualization_example.png (追加)
static/images/noodles.png (追加)
static/images/overview_arrows.png (追加)
static/images/pearson.png (追加)
static/images/pencil_icon.png (追加)
static/images/pencil_icon_dark.png (追加)
static/images/pencil_icon_grey.png (追加)
static/images/pileup_parser_help1.png (追加)
static/images/pileup_parser_help2.png (追加)
static/images/pileup_parser_help3.png (追加)
static/images/pileup_parser_help4.png (追加)
static/images/poisson2test_eqn1.png (追加)
static/images/poisson2test_eqn2.png (追加)
static/images/qk (追加)
static/images/qk/quickie1_small.png (追加)
static/images/qk/quickie2_small.png (追加)
static/images/qk/quickie3_small.png (追加)
static/images/qk/quickie4_small.png (追加)
static/images/qk/quickie5_small.png (追加)
static/images/qk/quickie6_small.png (追加)
static/images/qk/quickie7_small.png (追加)
static/images/resizable.png (追加)
static/images/scatter.png (追加)
static/images/scatterplot.png (追加)
static/images/screencast.png (追加)
static/images/short_reads_boxplot.png (追加)
static/images/silk (追加)
static/images/silk/add.png (追加)
static/images/silk/book.png (追加)
static/images/silk/book_open.png (追加)
static/images/silk/folder.png (追加)
static/images/silk/folder_page.png (追加)
static/images/silk/page_white.png (追加)
static/images/silk/page_white_compressed.png (追加)
static/images/silk/resultset_bottom.png (追加)
static/images/silk/resultset_next.png (追加)
static/images/silk/resultset_previous.png (追加)
static/images/solid_qual.png (追加)
static/images/spearman.png (追加)
static/images/square_empty.gif (追加)
static/images/square_error.gif (追加)
static/images/square_ok.gif (追加)
static/images/square_queued.gif (追加)
static/images/square_running.gif (追加)
static/images/star.gif (追加)
static/images/t2ps_autoscale.png (追加)
static/images/t2ps_autoscale_tree.png (追加)
static/images/t2ps_heatmap.png (追加)
static/images/t2ps_ideal.png (追加)
static/images/t2ps_ideal_ssp.png (追加)
static/images/t2ps_missing_nodes.png (追加)
static/images/t2ps_node_label.png (追加)
static/images/t2t_dropdown.png (追加)
static/images/t2t_exclude.png (追加)
static/images/t2t_include.png (追加)
static/images/t2t_tree_exclude.png (追加)
static/images/t2t_tree_include.png (追加)
static/images/thumbtack_icon.png (追加)
static/images/thumbtack_icon_dark.png (追加)
static/images/tipsy.gif (追加)
static/images/tool_menu_down_arrow.gif (追加)
static/images/tools (追加)
static/images/tools.gif (追加)
static/images/tools/lda (追加)
static/images/tools/lda/first_matrix_generator_example_file.png (追加)
static/images/tools/lda/second_matrix_generator_example_file.png (追加)
static/images/toolsExpandingMenu.gif (追加)
static/images/tracks (追加)
static/images/tracks/close_btn.gif (追加)
static/images/tracks/go_btn.gif (追加)
static/images/tracks/handle-left.gif (追加)
static/images/tracks/handle-right.gif (追加)
static/images/tracks/pan_left.gif (追加)
static/images/tracks/pan_right.gif (追加)
static/images/tracks/show_history.gif (追加)
static/images/tracks/zoom_in.gif (追加)
static/images/tracks/zoom_in_full.gif (追加)
static/images/tracks/zoom_out.gif (追加)
static/images/tracks/zoom_out_full.gif (追加)
static/images/up.gif (追加)
static/images/visualization (追加)
static/images/visualization/draggable_horizontal.png (追加)
static/images/visualization/strand_left.png (追加)
static/images/visualization/strand_left_inv.png (追加)
static/images/visualization/strand_right.png (追加)
static/images/visualization/strand_right_inv.png (追加)
static/images/welcomePhoto.jpg (追加)
static/images/xy_example.jpg (追加)
static/images/yui (追加)
static/images/yui/rel_interstitial_loading.gif (追加)
static/jqtouch (追加)
static/jqtouch/img (追加)
static/jqtouch/img/backButton.png (追加)
static/jqtouch/img/back_button.png (追加)
static/jqtouch/img/back_button_clicked.png (追加)
static/jqtouch/img/bg_row.gif (追加)
static/jqtouch/img/bg_row_select.gif (追加)
static/jqtouch/img/blueButton.png (追加)
static/jqtouch/img/button.png (追加)
static/jqtouch/img/button_clicked.png (追加)
static/jqtouch/img/cancel.png (追加)
static/jqtouch/img/chevron.png (追加)
static/jqtouch/img/chevron_select.png (追加)
static/jqtouch/img/grayButton.png (追加)
static/jqtouch/img/header.gif (追加)
static/jqtouch/img/listGroup.png (追加)
static/jqtouch/img/loading.gif (追加)
static/jqtouch/img/pinstripes.png (追加)
static/jqtouch/img/selection.png (追加)
static/jqtouch/img/thumb.png (追加)
static/jqtouch/img/toggle.png (追加)
static/jqtouch/img/toggleOn.png (追加)
static/jqtouch/img/toolButton.png (追加)
static/jqtouch/img/toolbar.gif (追加)
static/jqtouch/img/toolbar.png (追加)
static/jqtouch/img/whiteButton.png (追加)
static/jqtouch/jqtouch.css (追加)
static/june_2007_style (追加)
static/june_2007_style/Makefile (追加)
static/june_2007_style/autocomplete_tagging.css.tmpl (追加)
static/june_2007_style/base.css.tmpl (追加)
static/june_2007_style/blue (追加)
static/june_2007_style/blue/autocomplete_tagging.css (追加)
static/june_2007_style/blue/base.css (追加)
static/june_2007_style/blue/base_bg.png (追加)
static/june_2007_style/blue/button_bar_bg_light.png (追加)
static/june_2007_style/blue/data_empty.png (追加)
static/june_2007_style/blue/data_error.png (追加)
static/june_2007_style/blue/data_ok.png (追加)
static/june_2007_style/blue/data_queued.png (追加)
static/june_2007_style/blue/data_running.gif (追加)
static/june_2007_style/blue/data_upload.gif (追加)
static/june_2007_style/blue/done_message_icon.png (追加)
static/june_2007_style/blue/embed_item.css (追加)
static/june_2007_style/blue/error_bg.png (追加)
static/june_2007_style/blue/error_large.png (追加)
static/june_2007_style/blue/error_message_icon.png (追加)
static/june_2007_style/blue/error_small.png (追加)
static/june_2007_style/blue/footer_title_bg.png (追加)
static/june_2007_style/blue/form_body_bg.png (追加)
static/june_2007_style/blue/form_title_bg.png (追加)
static/june_2007_style/blue/fugue.png (追加)
static/june_2007_style/blue/gray_bg.png (追加)
static/june_2007_style/blue/hgrad.png (追加)
static/june_2007_style/blue/hgrad_over.png (追加)
static/june_2007_style/blue/history-buttons.png (追加)
static/june_2007_style/blue/history-states.png (追加)
static/june_2007_style/blue/history.css (追加)
static/june_2007_style/blue/info_large.png (追加)
static/june_2007_style/blue/info_message_icon.png (追加)
static/june_2007_style/blue/info_small.png (追加)
static/june_2007_style/blue/iphone.css (追加)
static/june_2007_style/blue/jquery.rating.css (追加)
static/june_2007_style/blue/layout_callout_top.png (追加)
static/june_2007_style/blue/library.css (追加)
static/june_2007_style/blue/masthead.css (追加)
static/june_2007_style/blue/masthead_bg.png (追加)
static/june_2007_style/blue/menu_bg.png (追加)
static/june_2007_style/blue/ok_bg.png (追加)
static/june_2007_style/blue/ok_large.png (追加)
static/june_2007_style/blue/ok_small.png (追加)
static/june_2007_style/blue/overcast (追加)
static/june_2007_style/blue/overcast/images (追加)
static/june_2007_style/blue/overcast/images/ui-bg_glass_100_f8f8f8_1x400.png (追加)
static/june_2007_style/blue/overcast/images/ui-bg_glass_35_dddddd_1x400.png (追加)
static/june_2007_style/blue/overcast/images/ui-bg_glass_60_eeeeee_1x400.png (追加)
static/june_2007_style/blue/overcast/images/ui-bg_inset-hard_75_999999_1x100.png (追加)
static/june_2007_style/blue/overcast/images/ui-bg_inset-soft_50_c9c9c9_1x100.png (追加)
static/june_2007_style/blue/overcast/jquery-ui-1.8.5.custom.css (追加)
static/june_2007_style/blue/panel_header_bg.png (追加)
static/june_2007_style/blue/panel_layout.css (追加)
static/june_2007_style/blue/popupmenu_callout_top.png (追加)
static/june_2007_style/blue/tiny_arrow_left.png (追加)
static/june_2007_style/blue/tiny_arrow_right.png (追加)
static/june_2007_style/blue/tool_menu.css (追加)
static/june_2007_style/blue/trackster.css (追加)
static/june_2007_style/blue/wait_large.png (追加)
static/june_2007_style/blue/wait_small.png (追加)
static/june_2007_style/blue/warn_bg.png (追加)
static/june_2007_style/blue/warn_large.png (追加)
static/june_2007_style/blue/warn_message_icon.png (追加)
static/june_2007_style/blue/warn_small.png (追加)
static/june_2007_style/blue/workflow_circle_drag.png (追加)
static/june_2007_style/blue/workflow_circle_green.png (追加)
static/june_2007_style/blue/workflow_circle_open.png (追加)
static/june_2007_style/blue_colors.ini (追加)
static/june_2007_style/blue_colors.ini.bak (追加)
static/june_2007_style/callout_top.py (追加)
static/june_2007_style/circle.py (追加)
static/june_2007_style/embed_item.css.tmpl (追加)
static/june_2007_style/galaxy_icons.svg (追加)
static/june_2007_style/galaxy_spinner.fla (追加)
static/june_2007_style/gradient.py (追加)
static/june_2007_style/history.css.tmpl (追加)
static/june_2007_style/iphone.css.tmpl (追加)
static/june_2007_style/library.css.tmpl (追加)
static/june_2007_style/make_style.py (追加)
static/june_2007_style/masthead.css.tmpl (追加)
static/june_2007_style/panel_layout.css.tmpl (追加)
static/june_2007_style/png_over_color.py (追加)
static/june_2007_style/process_css.py (追加)
static/june_2007_style/shared_images (追加)
static/june_2007_style/shared_images/data_empty.png (追加)
static/june_2007_style/shared_images/data_error.png (追加)
static/june_2007_style/shared_images/data_ok.png (追加)
static/june_2007_style/shared_images/data_queued.png (追加)
static/june_2007_style/shared_images/data_running.gif (追加)
static/june_2007_style/shared_images/error_large.png (追加)
static/june_2007_style/shared_images/error_small.png (追加)
static/june_2007_style/shared_images/info_large.png (追加)
static/june_2007_style/shared_images/info_small.png (追加)
static/june_2007_style/shared_images/ok_large.png (追加)
static/june_2007_style/shared_images/ok_small.png (追加)
static/june_2007_style/shared_images/wait_large.png (追加)
static/june_2007_style/shared_images/wait_small.png (追加)
static/june_2007_style/shared_images/warn_large.png (追加)
static/june_2007_style/shared_images/warn_small.png (追加)
static/june_2007_style/tool_menu.css.tmpl (追加)
static/june_2007_style/trackster.css.tmpl (追加)
static/laj (追加)
static/laj/docs (追加)
static/laj/docs/java_plugin_help.html (追加)
static/laj/docs/laj_applet_help.html (追加)
static/laj/laj.jar (追加)
static/light_hatched_style (追加)
static/light_hatched_style/Makefile (追加)
static/light_hatched_style/base.css.tmpl (追加)
static/light_hatched_style/blue (追加)
static/light_hatched_style/blue/base.css (追加)
static/light_hatched_style/blue/base_bg.png (追加)
static/light_hatched_style/blue/data_empty.png (追加)
static/light_hatched_style/blue/data_error.png (追加)
static/light_hatched_style/blue/data_ok.png (追加)
static/light_hatched_style/blue/data_queued.png (追加)
static/light_hatched_style/blue/data_running.gif (追加)
static/light_hatched_style/blue/done_message_icon.png (追加)
static/light_hatched_style/blue/error_bg.png (追加)
static/light_hatched_style/blue/error_large.png (追加)
static/light_hatched_style/blue/error_message_icon.png (追加)
static/light_hatched_style/blue/error_small.png (追加)
static/light_hatched_style/blue/footer_title_bg.png (追加)
static/light_hatched_style/blue/form_title_bg.png (追加)
static/light_hatched_style/blue/gray_bg.png (追加)
static/light_hatched_style/blue/history.css (追加)
static/light_hatched_style/blue/info_large.png (追加)
static/light_hatched_style/blue/info_message_icon.png (追加)
static/light_hatched_style/blue/info_small.png (追加)
static/light_hatched_style/blue/masthead.css (追加)
static/light_hatched_style/blue/masthead_bg.png (追加)
static/light_hatched_style/blue/menu_bg.png (追加)
static/light_hatched_style/blue/ok_bg.png (追加)
static/light_hatched_style/blue/ok_large.png (追加)
static/light_hatched_style/blue/ok_small.png (追加)
static/light_hatched_style/blue/tool_menu.css (追加)
static/light_hatched_style/blue/wait_large.png (追加)
static/light_hatched_style/blue/wait_small.png (追加)
static/light_hatched_style/blue/warn_bg.png (追加)
static/light_hatched_style/blue/warn_large.png (追加)
static/light_hatched_style/blue/warn_message_icon.png (追加)
static/light_hatched_style/blue/warn_small.png (追加)
static/light_hatched_style/blue_colors.ini (追加)
static/light_hatched_style/galaxy_icons.svg (追加)
static/light_hatched_style/galaxy_spinner.fla (追加)
static/light_hatched_style/gradient.py (追加)
static/light_hatched_style/green (追加)
static/light_hatched_style/green/base.css (追加)
static/light_hatched_style/green/base_bg.png (追加)
static/light_hatched_style/green/error_bg.png (追加)
static/light_hatched_style/green/footer_title_bg.png (追加)
static/light_hatched_style/green/form_title_bg.png (追加)
static/light_hatched_style/green/gray_bg.png (追加)
static/light_hatched_style/green/history.css (追加)
static/light_hatched_style/green/masthead.css (追加)
static/light_hatched_style/green/masthead_bg.png (追加)
static/light_hatched_style/green/menu_bg.png (追加)
static/light_hatched_style/green/ok_bg.png (追加)
static/light_hatched_style/green/tool_menu.css (追加)
static/light_hatched_style/green/warn_bg.png (追加)
static/light_hatched_style/green_colors.ini (追加)
static/light_hatched_style/history.css.tmpl (追加)
static/light_hatched_style/make_style.py (追加)
static/light_hatched_style/masthead.css.tmpl (追加)
static/light_hatched_style/png_over_color.py (追加)
static/light_hatched_style/shared_images (追加)
static/light_hatched_style/shared_images/data_empty.png (追加)
static/light_hatched_style/shared_images/data_error.png (追加)
static/light_hatched_style/shared_images/data_ok.png (追加)
static/light_hatched_style/shared_images/data_queued.png (追加)
static/light_hatched_style/shared_images/data_running.gif (追加)
static/light_hatched_style/shared_images/error_large.png (追加)
static/light_hatched_style/shared_images/error_small.png (追加)
static/light_hatched_style/shared_images/info_large.png (追加)
static/light_hatched_style/shared_images/info_small.png (追加)
static/light_hatched_style/shared_images/ok_large.png (追加)
static/light_hatched_style/shared_images/ok_small.png (追加)
static/light_hatched_style/shared_images/wait_large.png (追加)
static/light_hatched_style/shared_images/wait_small.png (追加)
static/light_hatched_style/shared_images/warn_large.png (追加)
static/light_hatched_style/shared_images/warn_small.png (追加)
static/light_hatched_style/tool_menu.css.tmpl (追加)
static/old_blue_style (追加)
static/old_blue_style/base.css (追加)
static/old_blue_style/history.css (追加)
static/old_blue_style/masthead.css (追加)
static/old_blue_style/tool_form.css (追加)
static/operation_icons (追加)
static/operation_icons/Q_plots.png (追加)
static/operation_icons/cluster.png (追加)
static/operation_icons/clusterMerge.png (追加)
static/operation_icons/complement.png (追加)
static/operation_icons/difference.png (追加)
static/operation_icons/dwt_IvC_1.png (追加)
static/operation_icons/dwt_IvC_2.png (追加)
static/operation_icons/dwt_IvC_3.png (追加)
static/operation_icons/dwt_IvC_4.png (追加)
static/operation_icons/dwt_IvC_5.png (追加)
static/operation_icons/dwt_cor_aVa_1.png (追加)
static/operation_icons/dwt_cor_aVa_2.png (追加)
static/operation_icons/dwt_cor_aVa_3.png (追加)
static/operation_icons/dwt_cor_aVa_4.png (追加)
static/operation_icons/dwt_cor_aVa_5.png (追加)
static/operation_icons/dwt_cor_aVb_all_1.png (追加)
static/operation_icons/dwt_cor_aVb_all_10.png (追加)
static/operation_icons/dwt_cor_aVb_all_2.png (追加)
static/operation_icons/dwt_cor_aVb_all_3.png (追加)
static/operation_icons/dwt_cor_aVb_all_4.png (追加)
static/operation_icons/dwt_cor_aVb_all_5.png (追加)
static/operation_icons/dwt_cor_aVb_all_6.png (追加)
static/operation_icons/dwt_cor_aVb_all_7.png (追加)
static/operation_icons/dwt_cor_aVb_all_8.png (追加)
static/operation_icons/dwt_cor_aVb_all_9.png (追加)
static/operation_icons/dwt_var_perClass.png (追加)
static/operation_icons/flanks_ex1.gif (追加)
static/operation_icons/flanks_ex2.gif (追加)
static/operation_icons/gops_cluster.gif (追加)
static/operation_icons/gops_complement.gif (追加)
static/operation_icons/gops_concatenate.gif (追加)
static/operation_icons/gops_intersect.gif (追加)
static/operation_icons/gops_merge.gif (追加)
static/operation_icons/gops_subtract.gif (追加)
static/operation_icons/intersect.png (追加)
static/operation_icons/merge.png (追加)
static/operation_icons/overlap.png (追加)
static/operation_icons/p_hist.png (追加)
static/operation_icons/proximityEx.png (追加)
static/operation_icons/proximityInc.png (追加)
static/operation_icons/q_hist.png (追加)
static/operation_icons/stacked_bars_plot.png (追加)
static/operation_icons/subtract.png (追加)
static/operation_icons/union.png (追加)
static/operation_icons/vicinityEnd.png (追加)
static/operation_icons/vicinityStart.png (追加)
static/patmat (追加)
static/patmat/findcluster.png (追加)
static/robots.txt (追加)
static/scripts (追加)
static/scripts/IE7.js (追加)
static/scripts/IE8.js (追加)
static/scripts/autocomplete_tagging.js (追加)
static/scripts/blank.gif (追加)
static/scripts/checkbox_and_radiobutton.js (追加)
static/scripts/class.js (追加)
static/scripts/excanvas.js (追加)
static/scripts/galaxy.base.js (追加)
static/scripts/galaxy.panels.js (追加)
static/scripts/galaxy.ui.scrollPanel.js (追加)
static/scripts/galaxy.workflow_editor.canvas.js (追加)
static/scripts/helper_functions.js (追加)
static/scripts/ie7-recalc.js (追加)
static/scripts/jqtouch.js (追加)
static/scripts/jquery.autocomplete.js (追加)
static/scripts/jquery.event.drag.js (追加)
static/scripts/jquery.event.drag.js.patch (追加)
static/scripts/jquery.event.drop.js (追加)
static/scripts/jquery.event.hover.js (追加)
static/scripts/jquery.form.js (追加)
static/scripts/jquery.js (追加)
static/scripts/jquery.jstore.js (追加)
static/scripts/jquery.mousewheel.js (追加)
static/scripts/jquery.rating.js (追加)
static/scripts/jquery.tipsy.js (追加)
static/scripts/jquery.ui.sortable.slider.js (追加)
static/scripts/jquery.wymeditor.js (追加)
static/scripts/json2.js (追加)
static/scripts/pack_scripts.py (追加)
static/scripts/packed (追加)
static/scripts/packed/IE7.js (追加)
static/scripts/packed/IE8.js (追加)
static/scripts/packed/autocomplete_tagging.js (追加)
static/scripts/packed/blank.gif (追加)
static/scripts/packed/checkbox_and_radiobutton.js (追加)
static/scripts/packed/class.js (追加)
static/scripts/packed/excanvas.js (追加)
static/scripts/packed/galaxy.base.js (追加)
static/scripts/packed/galaxy.panels.js (追加)
static/scripts/packed/galaxy.ui.scrollPanel.js (追加)
static/scripts/packed/galaxy.workflow_editor.canvas.js (追加)
static/scripts/packed/helper_functions.js (追加)
static/scripts/packed/ie7-recalc.js (追加)
static/scripts/packed/jqtouch.js (追加)
static/scripts/packed/jquery.autocomplete.js (追加)
static/scripts/packed/jquery.event.drag.js (追加)
static/scripts/packed/jquery.event.drop.js (追加)
static/scripts/packed/jquery.event.hover.js (追加)
static/scripts/packed/jquery.form.js (追加)
static/scripts/packed/jquery.js (追加)
static/scripts/packed/jquery.jstore.js (追加)
static/scripts/packed/jquery.mousewheel.js (追加)
static/scripts/packed/jquery.rating.js (追加)
static/scripts/packed/jquery.tipsy.js (追加)
static/scripts/packed/jquery.ui.sortable.slider.js (追加)
static/scripts/packed/jquery.wymeditor.js (追加)
static/scripts/packed/json2.js (追加)
static/scripts/packed/timer.js (追加)
static/scripts/packed/trackster.js (追加)
static/scripts/timer.js (追加)
static/scripts/tools (追加)
static/scripts/tools/rgenetics (追加)
static/scripts/tools/rgenetics/checkbox_and_radiobutton.js (追加)
static/scripts/tools/rgenetics/helper_functions.js (追加)
static/scripts/tools/rgenetics/timer.js (追加)
static/scripts/trackster.js (追加)
static/user_disabled.html (追加)
static/welcome.html (追加)
static/welcome.rst (追加)
static/wymeditor (追加)
static/wymeditor/iframe (追加)
static/wymeditor/iframe/default (追加)
static/wymeditor/iframe/default/lbl-blockquote.png (追加)
static/wymeditor/iframe/default/lbl-h1.png (追加)
static/wymeditor/iframe/default/lbl-h2.png (追加)
static/wymeditor/iframe/default/lbl-h3.png (追加)
static/wymeditor/iframe/default/lbl-h4.png (追加)
static/wymeditor/iframe/default/lbl-h5.png (追加)
static/wymeditor/iframe/default/lbl-h6.png (追加)
static/wymeditor/iframe/default/lbl-p.png (追加)
static/wymeditor/iframe/default/lbl-pre.png (追加)
static/wymeditor/iframe/default/wymiframe.css (追加)
static/wymeditor/iframe/default/wymiframe.html (追加)
static/wymeditor/iframe/galaxy (追加)
static/wymeditor/iframe/galaxy/lbl-blockquote.png (追加)
static/wymeditor/iframe/galaxy/lbl-h1.png (追加)
static/wymeditor/iframe/galaxy/lbl-h2.png (追加)
static/wymeditor/iframe/galaxy/lbl-h3.png (追加)
static/wymeditor/iframe/galaxy/lbl-h4.png (追加)
static/wymeditor/iframe/galaxy/lbl-h5.png (追加)
static/wymeditor/iframe/galaxy/lbl-h6.png (追加)
static/wymeditor/iframe/galaxy/lbl-p.png (追加)
static/wymeditor/iframe/galaxy/lbl-pre.png (追加)
static/wymeditor/iframe/galaxy/wymiframe.css (追加)
static/wymeditor/iframe/galaxy/wymiframe.html (追加)
static/wymeditor/lang (追加)
static/wymeditor/lang/bg.js (追加)
static/wymeditor/lang/ca.js (追加)
static/wymeditor/lang/cs.js (追加)
static/wymeditor/lang/de.js (追加)
static/wymeditor/lang/en.js (追加)
static/wymeditor/lang/es.js (追加)
static/wymeditor/lang/fa.js (追加)
static/wymeditor/lang/fi.js (追加)
static/wymeditor/lang/fr.js (追加)
static/wymeditor/lang/he.js (追加)
static/wymeditor/lang/hr.js (追加)
static/wymeditor/lang/hu.js (追加)
static/wymeditor/lang/it.js (追加)
static/wymeditor/lang/nb.js (追加)
static/wymeditor/lang/nl.js (追加)
static/wymeditor/lang/nn.js (追加)
static/wymeditor/lang/pl.js (追加)
static/wymeditor/lang/pt-br.js (追加)
static/wymeditor/lang/pt.js (追加)
static/wymeditor/lang/ru.js (追加)
static/wymeditor/lang/sv.js (追加)
static/wymeditor/lang/tr.js (追加)
static/wymeditor/lang/zh_cn.js (追加)
static/wymeditor/skins (追加)
static/wymeditor/skins/default (追加)
static/wymeditor/skins/default/icons.png (追加)
static/wymeditor/skins/default/skin.css (追加)
static/wymeditor/skins/default/skin.js (追加)
static/wymeditor/skins/galaxy (追加)
static/wymeditor/skins/galaxy/icons.png (追加)
static/wymeditor/skins/galaxy/skin.css (追加)
static/wymeditor/skins/galaxy/skin.js (追加)
templates (追加)
templates/admin (追加)
templates/admin/dataset_security (追加)
templates/admin/dataset_security/group (追加)
templates/admin/dataset_security/group/grid.mako (追加)
templates/admin/dataset_security/group/group.mako (追加)
templates/admin/dataset_security/group/group_create.mako (追加)
templates/admin/dataset_security/group/group_rename.mako (追加)
templates/admin/dataset_security/role (追加)
templates/admin/dataset_security/role/grid.mako (追加)
templates/admin/dataset_security/role/role.mako (追加)
templates/admin/dataset_security/role/role_create.mako (追加)
templates/admin/dataset_security/role/role_rename.mako (追加)
templates/admin/forms (追加)
templates/admin/forms/create_form.mako (追加)
templates/admin/forms/edit_form.mako (追加)
templates/admin/forms/grid.mako (追加)
templates/admin/forms/show_form_read_only.mako (追加)
templates/admin/jobs.mako (追加)
templates/admin/library (追加)
templates/admin/library/grid.mako (追加)
templates/admin/library/new_library.mako (追加)
templates/admin/memdump.mako (追加)
templates/admin/reload_tool.mako (追加)
templates/admin/requests (追加)
templates/admin/requests/create_request_type.mako (追加)
templates/admin/requests/dataset.mako (追加)
templates/admin/requests/edit_request_type.mako (追加)
templates/admin/requests/get_data.mako (追加)
templates/admin/requests/grid.mako (追加)
templates/admin/requests/reject.mako (追加)
templates/admin/requests/rename_datasets.mako (追加)
templates/admin/requests/request_type_permissions.mako (追加)
templates/admin/requests/view_request_type.mako (追加)
templates/admin/user (追加)
templates/admin/user/grid.mako (追加)
templates/admin/user/reset_password.mako (追加)
templates/admin/user/user.mako (追加)
templates/base.mako (追加)
templates/base_panels.mako (追加)
templates/community_rating.mako (追加)
templates/dataset (追加)
templates/dataset/copy_view.mako (追加)
templates/dataset/display.mako (追加)
templates/dataset/display_application (追加)
templates/dataset/display_application/display.mako (追加)
templates/dataset/edit_attributes.mako (追加)
templates/dataset/embed.mako (追加)
templates/dataset/errors.mako (追加)
templates/dataset/grid.mako (追加)
templates/dataset/item_content.mako (追加)
templates/dataset/large_file.mako (追加)
templates/dataset/security_common.mako (追加)
templates/display_base.mako (追加)
templates/display_common.mako (追加)
templates/embed_base.mako (追加)
templates/export_base.mako (追加)
templates/form.mako (追加)
templates/genetrack (追加)
templates/genetrack/base.html (追加)
templates/genetrack/index.html (追加)
templates/genetrack/invalid.html (追加)
templates/genetrack/search.html (追加)
templates/grid_base.mako (追加)
templates/grid_base_async.mako (追加)
templates/grid_common.mako (追加)
templates/history (追加)
templates/history/clone.mako (追加)
templates/history/display.mako (追加)
templates/history/display_structured.mako (追加)
templates/history/embed.mako (追加)
templates/history/grid.mako (追加)
templates/history/item_content.mako (追加)
templates/history/list_as_xml.mako (追加)
templates/history/list_published.mako (追加)
templates/history/options.mako (追加)
templates/history/permissions.mako (追加)
templates/history/rename.mako (追加)
templates/history/share.mako (追加)
templates/history/view.mako (追加)
templates/ind_share_base.mako (追加)
templates/library (追加)
templates/library/common (追加)
templates/library/common/browse_library.mako (追加)
templates/library/common/common.mako (追加)
templates/library/common/edit_template.mako (追加)
templates/library/common/folder_info.mako (追加)
templates/library/common/folder_permissions.mako (追加)
templates/library/common/ldda_edit_info.mako (追加)
templates/library/common/ldda_info.mako (追加)
templates/library/common/ldda_permissions.mako (追加)
templates/library/common/library_dataset_info.mako (追加)
templates/library/common/library_dataset_permissions.mako (追加)
templates/library/common/library_info.mako (追加)
templates/library/common/library_item_info.mako (追加)
templates/library/common/library_permissions.mako (追加)
templates/library/common/new_folder.mako (追加)
templates/library/common/select_template.mako (追加)
templates/library/common/upload.mako (追加)
templates/library/grid.mako (追加)
templates/library/index.mako (追加)
templates/message.mako (追加)
templates/mobile (追加)
templates/mobile/dataset (追加)
templates/mobile/dataset/detail.mako (追加)
templates/mobile/dataset/peek.mako (追加)
templates/mobile/form.mako (追加)
templates/mobile/history (追加)
templates/mobile/history/detail.mako (追加)
templates/mobile/history/list.mako (追加)
templates/mobile/index.mako (追加)
templates/mobile/manage_library.mako (追加)
templates/mobile/settings.mako (追加)
templates/no_access.mako (追加)
templates/page (追加)
templates/page/create.mako (追加)
templates/page/display.mako (追加)
templates/page/editor.mako (追加)
templates/page/history_annotation_table.mako (追加)
templates/page/index.mako (追加)
templates/page/list_published.mako (追加)
templates/page/select_items_grid.mako (追加)
templates/page/select_items_grid_async.mako (追加)
templates/page/wymiframe.mako (追加)
templates/panels.mako (追加)
templates/requests (追加)
templates/requests/common (追加)
templates/requests/common/create_request.mako (追加)
templates/requests/common/dataset_transfer.mako (追加)
templates/requests/common/edit_basic_request_info.mako (追加)
templates/requests/common/events.mako (追加)
templates/requests/common/find_samples.mako (追加)
templates/requests/common/index.mako (追加)
templates/requests/common/manage_request.mako (追加)
templates/requests/common/sample_datasets.mako (追加)
templates/requests/common/sample_events.mako (追加)
templates/requests/common/sample_state.mako (追加)
templates/requests/find_samples_index.mako (追加)
templates/requests/grid.mako (追加)
templates/requests/index.mako (追加)
templates/root (追加)
templates/root/history.mako (追加)
templates/root/history_as_xml.mako (追加)
templates/root/history_common.mako (追加)
templates/root/history_item.mako (追加)
templates/root/index.mako (追加)
templates/root/redirect.mako (追加)
templates/root/tool_menu.mako (追加)
templates/sharing_base.mako (追加)
templates/tagging_common.mako (追加)
templates/tool_executed.mako (追加)
templates/tool_form.mako (追加)
templates/tracks (追加)
templates/tracks/add_to_viz.mako (追加)
templates/tracks/add_tracks.mako (追加)
templates/tracks/browser.mako (追加)
templates/tracks/index.mako (追加)
templates/tracks/new_browser.mako (追加)
templates/user (追加)
templates/user/dbkeys.mako (追加)
templates/user/edit_address.mako (追加)
templates/user/index.mako (追加)
templates/user/info.mako (追加)
templates/user/login.mako (追加)
templates/user/logout.mako (追加)
templates/user/new_address.mako (追加)
templates/user/permissions.mako (追加)
templates/user/register.mako (追加)
templates/user/reset_password.mako (追加)
templates/visualization (追加)
templates/visualization/create.mako (追加)
templates/visualization/display.mako (追加)
templates/visualization/embed.mako (追加)
templates/visualization/item_content.mako (追加)
templates/visualization/list.mako (追加)
templates/visualization/list_published.mako (追加)
templates/webapps (追加)
templates/webapps/community (追加)
templates/webapps/community/admin (追加)
templates/webapps/community/admin/center.mako (追加)
templates/webapps/community/admin/index.mako (追加)
templates/webapps/community/admin/reject_tool.mako (追加)
templates/webapps/community/base_panels.mako (追加)
templates/webapps/community/category (追加)
templates/webapps/community/category/create_category.mako (追加)
templates/webapps/community/category/edit_category.mako (追加)
templates/webapps/community/category/grid.mako (追加)
templates/webapps/community/common (追加)
templates/webapps/community/common/common.mako (追加)
templates/webapps/community/common/rate_tool.mako (追加)
templates/webapps/community/common/view_tool_history.mako (追加)
templates/webapps/community/index.mako (追加)
templates/webapps/community/message.mako (追加)
templates/webapps/community/tool (追加)
templates/webapps/community/tool/edit_tool.mako (追加)
templates/webapps/community/tool/grid.mako (追加)
templates/webapps/community/tool/help.mako (追加)
templates/webapps/community/tool/view_tool.mako (追加)
templates/webapps/community/upload (追加)
templates/webapps/community/upload/upload.mako (追加)
templates/webapps/community/user (追加)
templates/webapps/community/user/info.mako (追加)
templates/webapps/galaxy (追加)
templates/webapps/galaxy/admin (追加)
templates/webapps/galaxy/admin/center.mako (追加)
templates/webapps/galaxy/admin/index.mako (追加)
templates/webapps/galaxy/base_panels.mako (追加)
templates/webapps/galaxy/user (追加)
templates/webapps/galaxy/user/api_keys.mako (追加)
templates/webapps/galaxy/user/info.mako (追加)
templates/webapps/reports (追加)
templates/webapps/reports/base_panels.mako (追加)
templates/webapps/reports/dataset_info.mako (追加)
templates/webapps/reports/grid.mako (追加)
templates/webapps/reports/index.mako (追加)
templates/webapps/reports/job_info.mako (追加)
templates/webapps/reports/jobs_per_domain.mako (追加)
templates/webapps/reports/jobs_per_month_all.mako (追加)
templates/webapps/reports/jobs_per_month_in_error.mako (追加)
templates/webapps/reports/jobs_per_tool.mako (追加)
templates/webapps/reports/jobs_per_user.mako (追加)
templates/webapps/reports/jobs_specified_month_all.mako (追加)
templates/webapps/reports/jobs_specified_month_in_error.mako (追加)
templates/webapps/reports/jobs_tool_per_month.mako (追加)
templates/webapps/reports/jobs_user_per_month.mako (追加)
templates/webapps/reports/registered_users.mako (追加)
templates/webapps/reports/registered_users_per_month.mako (追加)
templates/webapps/reports/registered_users_specified_date.mako (追加)
templates/webapps/reports/registered_users_specified_month.mako (追加)
templates/webapps/reports/system.mako (追加)
templates/webapps/reports/users_last_access_date.mako (追加)
templates/workflow (追加)
templates/workflow/build_from_current_history.mako (追加)
templates/workflow/configure_menu.mako (追加)
templates/workflow/display.mako (追加)
templates/workflow/edit_attributes.mako (追加)
templates/workflow/editor.mako (追加)
templates/workflow/editor_generic_form.mako (追加)
templates/workflow/editor_tool_form.mako (追加)
templates/workflow/embed.mako (追加)
templates/workflow/export.mako (追加)
templates/workflow/index.mako (追加)
templates/workflow/item_content.mako (追加)
templates/workflow/list.mako (追加)
templates/workflow/list_for_run.mako (追加)
templates/workflow/list_published.mako (追加)
templates/workflow/myexp_export.mako (追加)
templates/workflow/myexp_export_content.mako (追加)
templates/workflow/rename.mako (追加)
templates/workflow/run.mako (追加)
templates/workflow/run_complete.mako (追加)
templates/workflow/sharing.mako (追加)
test (追加)
test-data (追加)
test-data/1.axt (追加)
test-data/1.bam (追加)
test-data/1.bed (追加)
test-data/1.bed.spaces (追加)
test-data/1.bigbed (追加)
test-data/1.bigwig (追加)
test-data/1.customtrack (追加)
test-data/1.fasta (追加)
test-data/1.fastq (追加)
test-data/1.fastqsanger (追加)
test-data/1.fastqsolexa (追加)
test-data/1.interval (追加)
test-data/1.lav (追加)
test-data/1.pileup (追加)
test-data/1.sam (追加)
test-data/1.scf (追加)
test-data/1.sff (追加)
test-data/1.tabular (追加)
test-data/1.txt (追加)
test-data/1.wig (追加)
test-data/10.bed (追加)
test-data/11.bed (追加)
test-data/12.bed (追加)
test-data/13.bed (追加)
test-data/2.bed (追加)
test-data/2.bigwig (追加)
test-data/2.fasta (追加)
test-data/2.fastq (追加)
test-data/2.fastqsanger (追加)
test-data/2.fastqsolexa (追加)
test-data/2.interval (追加)
test-data/2.lav (追加)
test-data/2.pep (追加)
test-data/2.sam (追加)
test-data/2.sff (追加)
test-data/2.tabular (追加)
test-data/2.txt (追加)
test-data/2.wig (追加)
test-data/2_mod.bed (追加)
test-data/2gen.fastq (追加)
test-data/2way.maf (追加)
test-data/3.bam (追加)
test-data/3.bed (追加)
test-data/3.fasta (追加)
test-data/3.fastqsanger (追加)
test-data/3.maf (追加)
test-data/3.sam (追加)
test-data/3.wig (追加)
test-data/3_wig.bed (追加)
test-data/3way.maf (追加)
test-data/4.bed (追加)
test-data/4.bed.bz2 (追加)
test-data/4.bed.gz (追加)
test-data/4.bed.zip (追加)
test-data/4.fasta (追加)
test-data/4.maf (追加)
test-data/454.fasta (追加)
test-data/454.qual (追加)
test-data/454Length.txt (追加)
test-data/454Score.pdf (追加)
test-data/454Score.png (追加)
test-data/454_high_quality_hist.pdf (追加)
test-data/4_windows.bed (追加)
test-data/4_windows.gff (追加)
test-data/4_windows_2.bed (追加)
test-data/4_windows_2.gff (追加)
test-data/5.bed (追加)
test-data/5.gff (追加)
test-data/5.gff3 (追加)
test-data/5.maf (追加)
test-data/5_liftover_mapped.bed (追加)
test-data/5_liftover_unmapped.bed (追加)
test-data/6.bed (追加)
test-data/6.maf (追加)
test-data/6_feature_coverage.bed (追加)
test-data/6_indels.tabular (追加)
test-data/6_mask_cpg.maf (追加)
test-data/6_mask_noncpg.maf (追加)
test-data/6_quality_filter.maf (追加)
test-data/7.bed (追加)
test-data/8.bed (追加)
test-data/8.tabular (追加)
test-data/9.bed (追加)
test-data/9_hg18.bed (追加)
test-data/DNAseHSS.dat (追加)
test-data/Extract_features1_out.gff (追加)
test-data/Interval2Maf_pairwise_out.maf (追加)
test-data/Ssuis.fasta (追加)
test-data/XY_Plot_1_out.pdf (追加)
test-data/a.tab (追加)
test-data/a.txt (追加)
test-data/add_scores_input1.interval (追加)
test-data/add_scores_input2.bed (追加)
test-data/add_scores_output1.interval (追加)
test-data/add_scores_output2.interval (追加)
test-data/aggregate_binned_scores_3.wig (追加)
test-data/aggregate_binned_scores_in_intervals.bed (追加)
test-data/aggregate_binned_scores_in_intervals.out (追加)
test-data/aggregate_binned_scores_in_intervals2.interval (追加)
test-data/aggregate_binned_scores_in_intervals3.out (追加)
test-data/annotation_profiler_1.out (追加)
test-data/annotation_profiler_2.out (追加)
test-data/asian_chars_1.txt (追加)
test-data/axt_to_concat_fasta.dat (追加)
test-data/axt_to_fasta.dat (追加)
test-data/b1.fasta (追加)
test-data/bam_to_sam_out1.sam (追加)
test-data/bam_to_sam_out2.sam (追加)
test-data/beam_output1.tab (追加)
test-data/beam_output2.tab (追加)
test-data/bed2gff_out.gff (追加)
test-data/bfast_out1.sam (追加)
test-data/bfast_out2.sam (追加)
test-data/blat_coverage_report_test1.out (追加)
test-data/blat_coverage_report_test1.txt (追加)
test-data/blat_mapping_test1.out (追加)
test-data/blat_mapping_test1.txt (追加)
test-data/blat_wrapper_test1.fa (追加)
test-data/blat_wrapper_test1.out (追加)
test-data/bowtie_in1.fastqcssanger (追加)
test-data/bowtie_in2.fastqsanger (追加)
test-data/bowtie_in3.fastqcssanger (追加)
test-data/bowtie_in4.fastqcssanger (追加)
test-data/bowtie_in5.fastqsanger (追加)
test-data/bowtie_in6.fastqsanger (追加)
test-data/bowtie_out1.sam (追加)
test-data/bowtie_out2.sam (追加)
test-data/bowtie_out3.sam (追加)
test-data/bowtie_out4.sam (追加)
test-data/bowtie_out5.sam (追加)
test-data/bowtie_out6.sam (追加)
test-data/bowtie_out7.sam (追加)
test-data/bowtie_out8.sam (追加)
test-data/boxplot_summary_statistics_out.png (追加)
test-data/branchlength_fasta_in.dat (追加)
test-data/branchlength_in.fasta (追加)
test-data/branchlength_out.dat (追加)
test-data/branchlength_out.tabular (追加)
test-data/build_ucsc_custom_track_out1.customtrack (追加)
test-data/bwa_wrapper_in1.fastq (追加)
test-data/bwa_wrapper_in2.fastq (追加)
test-data/bwa_wrapper_in3.fastq (追加)
test-data/bwa_wrapper_out1.sam (追加)
test-data/bwa_wrapper_out2.sam (追加)
test-data/bwa_wrapper_out3.sam (追加)
test-data/cat_wrapper_out1.bed (追加)
test-data/categories.tabular (追加)
test-data/categories_criteria.tabular (追加)
test-data/categorized_elements.tabular (追加)
test-data/cc.EarlyRepSeg.20051216.bed (追加)
test-data/cca_out1.tabular (追加)
test-data/cca_out2.pdf (追加)
test-data/cf-gene2exon.dat (追加)
test-data/cf_maf2fasta.dat (追加)
test-data/cf_maf2fasta_concat.dat (追加)
test-data/cf_maf2fasta_new.dat (追加)
test-data/cf_maf_limit_to_species.dat (追加)
test-data/cf_maf_to_bed.dat (追加)
test-data/changeCase_out1.tabular (追加)
test-data/changeCase_out2.tabular (追加)
test-data/chipseq_enriched.bed.gz (追加)
test-data/chipseq_input.bed.gz (追加)
test-data/chrY1.bed (追加)
test-data/chrY2.bed (追加)
test-data/chrY_Coverage.bed (追加)
test-data/chr_m.fasta (追加)
test-data/closest_features.interval (追加)
test-data/closest_features_both.gff (追加)
test-data/closest_features_both2.gff (追加)
test-data/closest_features_down.interval (追加)
test-data/closest_features_either.interval (追加)
test-data/closest_features_up.interval (追加)
test-data/codingSnps_input1.interval (追加)
test-data/codingSnps_input2.bed (追加)
test-data/codingSnps_input2.interval (追加)
test-data/codingSnps_inputGenes1.bed (追加)
test-data/codingSnps_inputGenes2.bed (追加)
test-data/codingSnps_output.interval (追加)
test-data/codingSnps_output1.interval (追加)
test-data/codingSnps_output2.interval (追加)
test-data/column_join_in1.pileup (追加)
test-data/column_join_in10.pileup (追加)
test-data/column_join_in11.pileup (追加)
test-data/column_join_in12.pileup (追加)
test-data/column_join_in13.tabular (追加)
test-data/column_join_in14.tabular (追加)
test-data/column_join_in15.tabular (追加)
test-data/column_join_in2.pileup (追加)
test-data/column_join_in3.pileup (追加)
test-data/column_join_in4.pileup (追加)
test-data/column_join_in5.pileup (追加)
test-data/column_join_in6.pileup (追加)
test-data/column_join_in7.pileup (追加)
test-data/column_join_in8.pileup (追加)
test-data/column_join_in9.pileup (追加)
test-data/column_join_out1.pileup (追加)
test-data/column_join_out2.pileup (追加)
test-data/column_join_out3.pileup (追加)
test-data/column_join_out4.pileup (追加)
test-data/column_join_out5.tabular (追加)
test-data/column_maker_out1.interval (追加)
test-data/column_maker_out2.interval (追加)
test-data/column_maker_out3.interval (追加)
test-data/combine_phiX_out_1.fastqcssanger (追加)
test-data/combine_phiX_out_2.fastqcssanger (追加)
test-data/convert_SOLiD_color2nuc_test1.out (追加)
test-data/convert_SOLiD_color2nuc_test1.txt (追加)
test-data/cor.tabular (追加)
test-data/cor_out.txt (追加)
test-data/criteria_elements_data.tabular (追加)
test-data/ctdBatchInput.txt (追加)
test-data/ctdBatchOut.txt (追加)
test-data/cuffcompare_in1.gtf (追加)
test-data/cuffcompare_in2.gtf (追加)
test-data/cuffcompare_in3.gtf (追加)
test-data/cuffcompare_out5.gtf (追加)
test-data/cuffcompare_out6.tracking (追加)
test-data/cuffdiff_in1.sam (追加)
test-data/cuffdiff_in2.sam (追加)
test-data/cuffdiff_out5.tracking (追加)
test-data/cufflinks_in.sam (追加)
test-data/cufflinks_out1.gtf (追加)
test-data/cufflinks_out2.expr (追加)
test-data/cufflinks_out3.expr (追加)
test-data/customTrack1.bed (追加)
test-data/customTrack2.bed (追加)
test-data/dna_filter_in1.tabular (追加)
test-data/dna_filter_out1.tabular (追加)
test-data/dna_filter_out2.tabular (追加)
test-data/dna_filter_out3.tabular (追加)
test-data/dna_filter_out4.tabular (追加)
test-data/dnds_inp.fasta (追加)
test-data/dnds_out.tabular (追加)
test-data/droPer1.bed (追加)
test-data/droPer1.dat (追加)
test-data/emboss_antigenic_out.tabular (追加)
test-data/emboss_backtranseq_out.fasta (追加)
test-data/emboss_banana_out.txt (追加)
test-data/emboss_biosed_out.fasta (追加)
test-data/emboss_btwisted_out.btwisted (追加)
test-data/emboss_cai_out.cai (追加)
test-data/emboss_charge_out.charge (追加)
test-data/emboss_chips_out.chips (追加)
test-data/emboss_codcmp_out.codcmp (追加)
test-data/emboss_coderet_out.coderet (追加)
test-data/emboss_compseq_out.compseq (追加)
test-data/emboss_cpgreport_out1.gff (追加)
test-data/emboss_cpgreport_out2.cpgreport (追加)
test-data/emboss_cusp_out.cusp (追加)
test-data/emboss_cutseq_out.fasta (追加)
test-data/emboss_dan_out.png (追加)
test-data/emboss_degapseq_out.fasta (追加)
test-data/emboss_descseq_out.fasta (追加)
test-data/emboss_einverted_out.einverted (追加)
test-data/emboss_epestfind_out.epestfind (追加)
test-data/emboss_equicktandem_out.equicktandem (追加)
test-data/emboss_est2genome_out.est2genome (追加)
test-data/emboss_etandem_out.table (追加)
test-data/emboss_extractseq_out.fasta (追加)
test-data/emboss_freak_out.freak (追加)
test-data/emboss_fuzznuc_out.tabular (追加)
test-data/emboss_fuzzpro_out.tabular (追加)
test-data/emboss_fuzztran_out.tabular (追加)
test-data/emboss_garnier_out.tabular (追加)
test-data/emboss_geecee_out.geecee (追加)
test-data/emboss_getorf_out.fasta (追加)
test-data/emboss_helixturnhelix_out.tabular (追加)
test-data/emboss_hmoment_out.hmoment (追加)
test-data/emboss_iep_out.iep (追加)
test-data/emboss_isochore_out.isochore (追加)
test-data/emboss_marscan_out.tabular (追加)
test-data/emboss_maskfeat_out.fasta (追加)
test-data/emboss_maskseq_out.fasta (追加)
test-data/emboss_matcher_out.fasta (追加)
test-data/emboss_msbar_out.fasta (追加)
test-data/emboss_needle_out.score (追加)
test-data/emboss_newcpgreport_out.newcpgreport (追加)
test-data/emboss_newcpgseek_out.newcpgseek (追加)
test-data/emboss_newseq_out.fasta (追加)
test-data/emboss_noreturn_out.noreturn (追加)
test-data/emboss_notseq_out.fasta (追加)
test-data/emboss_nthseq_out.fasta (追加)
test-data/emboss_palindrome_out.palindrome (追加)
test-data/emboss_pasteseq_out.fasta (追加)
test-data/emboss_patmatdb_out.tabular (追加)
test-data/emboss_pepcoil_out.pepcoil (追加)
test-data/emboss_pepstats_out.pepstats (追加)
test-data/emboss_plotorf_out.png (追加)
test-data/emboss_plotorf_out1.png (追加)
test-data/emboss_polydot_out.png (追加)
test-data/emboss_prettyseq_out.prettyseq (追加)
test-data/emboss_primersearch.fasta (追加)
test-data/emboss_primersearch_out.primersearch (追加)
test-data/emboss_revseq_out.fasta (追加)
test-data/emboss_seqmatchall_out.fasta (追加)
test-data/emboss_seqret_out.fasta (追加)
test-data/emboss_sigcleave_out.tabular (追加)
test-data/emboss_sirna_out.fasta (追加)
test-data/emboss_sixpack_out2.sixpack (追加)
test-data/emboss_skipseq_out.fasta (追加)
test-data/emboss_splitter_out.fasta (追加)
test-data/emboss_supermatcher_out.fasta (追加)
test-data/emboss_syco_out.syco (追加)
test-data/emboss_tranalign_out.fasta (追加)
test-data/emboss_transeq_out.fasta (追加)
test-data/emboss_trimest_out.fasta (追加)
test-data/emboss_trimseq_out.fasta (追加)
test-data/emboss_union_out.fasta (追加)
test-data/emboss_water_out.fasta (追加)
test-data/emboss_water_out.score (追加)
test-data/emboss_wobble_out.png (追加)
test-data/emboss_wobble_out.wobble (追加)
test-data/emboss_wordcount_out.wordcount (追加)
test-data/empty_file.dat (追加)
test-data/encode_1.bed (追加)
test-data/eq-addvalue.dat (追加)
test-data/eq-condense.dat (追加)
test-data/eq-convert.dat (追加)
test-data/eq-createinterval.dat (追加)
test-data/eq-cut.dat (追加)
test-data/eq-paste.dat (追加)
test-data/eq-removebeginning.dat (追加)
test-data/eq-showbeginning.dat (追加)
test-data/eq-showtail.dat (追加)
test-data/extract_genomic_dna.fa (追加)
test-data/extract_genomic_dna_out1.fasta (追加)
test-data/extract_genomic_dna_out2.fasta (追加)
test-data/extract_genomic_dna_out3.interval (追加)
test-data/extract_genomic_dna_out4.gff (追加)
test-data/extract_genomic_dna_out5.fasta (追加)
test-data/fasta_collapser1.fasta (追加)
test-data/fasta_collapser1.out (追加)
test-data/fasta_concatenate_out.fasta (追加)
test-data/fasta_formatter1.fasta (追加)
test-data/fasta_formatter1.out (追加)
test-data/fasta_formatter2.out (追加)
test-data/fasta_nuc_changer1.fasta (追加)
test-data/fasta_nuc_changer1.out (追加)
test-data/fasta_nuc_changer2.fasta (追加)
test-data/fasta_nuc_changer2.out (追加)
test-data/fasta_to_tabular_out1.tabular (追加)
test-data/fasta_to_tabular_out2.tabular (追加)
test-data/fasta_to_tabular_out3.tabular (追加)
test-data/fasta_tool_compute_length_1.out (追加)
test-data/fasta_tool_compute_length_2.out (追加)
test-data/fasta_tool_compute_length_3.out (追加)
test-data/fasta_tool_filter_length_1.out (追加)
test-data/fastq_combiner_in_1.fasta (追加)
test-data/fastq_combiner_in_1.qual454 (追加)
test-data/fastq_combiner_no_qual_ascii_out_1.fastqcssanger (追加)
test-data/fastq_combiner_no_qual_decimal_out_1.fastqsanger (追加)
test-data/fastq_conv_in1.fastq (追加)
test-data/fastq_conv_out1.fastqsanger (追加)
test-data/fastq_conv_out2.fastqsolexa (追加)
test-data/fastq_conv_out4.fasta (追加)
test-data/fastq_gen_conv_in1.fastq (追加)
test-data/fastq_gen_conv_in2.fastq (追加)
test-data/fastq_gen_conv_out1.fastqsanger (追加)
test-data/fastq_gen_conv_out2.fastqsanger (追加)
test-data/fastq_qual_conv1.fastq (追加)
test-data/fastq_qual_conv1.out (追加)
test-data/fastq_qual_conv1a.out (追加)
test-data/fastq_qual_conv2.fastq (追加)
test-data/fastq_qual_conv2.out (追加)
test-data/fastq_qual_conv2n.out (追加)
test-data/fastq_qual_filter1.fastq (追加)
test-data/fastq_qual_filter1a.out (追加)
test-data/fastq_qual_filter1b.out (追加)
test-data/fastq_stats1.fastq (追加)
test-data/fastq_stats1.out (追加)
test-data/fastq_stats_1_out.tabular (追加)
test-data/fastq_to_fasta1.fastq (追加)
test-data/fastq_to_fasta1a.out (追加)
test-data/fastq_to_fasta1b.out (追加)
test-data/fastq_to_fasta_python_1.out (追加)
test-data/fastq_to_fasta_python_2.out (追加)
test-data/fastq_to_tabular_out_1.tabular (追加)
test-data/fastq_to_tabular_out_2.tabular (追加)
test-data/fastq_trimmer_out1.fastqsanger (追加)
test-data/fastqsolexa_to_fasta_qual_out2.fasta (追加)
test-data/fastqsolexa_to_fasta_qual_out4.fasta (追加)
test-data/fastx_artifacts1.fasta (追加)
test-data/fastx_artifacts1.out (追加)
test-data/fastx_artifacts2.fastq (追加)
test-data/fastx_artifacts2.out (追加)
test-data/fastx_barcode_splitter1.fastq (追加)
test-data/fastx_barcode_splitter1.out (追加)
test-data/fastx_barcode_splitter1.txt (追加)
test-data/fastx_clipper1.fastq (追加)
test-data/fastx_clipper1a.out (追加)
test-data/fastx_rev_comp1.fasta (追加)
test-data/fastx_rev_comp2.fastq (追加)
test-data/fastx_reverse_complement1.out (追加)
test-data/fastx_reverse_complement2.out (追加)
test-data/fastx_trimmer1.fasta (追加)
test-data/fastx_trimmer1.out (追加)
test-data/fastx_trimmer2.fastq (追加)
test-data/fastx_trimmer2.out (追加)
test-data/filter1_test1.bed (追加)
test-data/filter1_test2.bed (追加)
test-data/filteredJoinedFlanksDNAse.dat (追加)
test-data/find_diag_hits.tabular (追加)
test-data/flankingSequencesWindows0.tabular (追加)
test-data/flankingSequencesWindows10.tabular (追加)
test-data/flankingSequencesWindows10_2.tabular (追加)
test-data/flanks_inp.bed (追加)
test-data/flanks_out.bed (追加)
test-data/flanks_out1.bed (追加)
test-data/flanks_out2.bed (追加)
test-data/fr.csfasta (追加)
test-data/fr.qualsolid (追加)
test-data/fs-compare-2.dat (追加)
test-data/fs-compare.dat (追加)
test-data/fs-grep.dat (追加)
test-data/fs-joiner.dat (追加)
test-data/fsa_extract_blastz_alignments.dat (追加)
test-data/fsa_interval2maf.dat (追加)
test-data/funDo_output1.interval (追加)
test-data/gencode_partition_out.bed (追加)
test-data/gene_bed_maf_to_fasta_out.fasta (追加)
test-data/gene_bed_maf_to_fasta_user_out.dat (追加)
test-data/gene_bed_maf_to_fasta_user_out.fasta (追加)
test-data/genoTestfile.map (追加)
test-data/genoTestfile.ped (追加)
test-data/gff2bed_in2.gff (追加)
test-data/gff2bed_out.bed (追加)
test-data/gff2bed_out2.bed (追加)
test-data/gff_filter_attr_in1.gff (追加)
test-data/gff_filter_by_attribute_out1.gff (追加)
test-data/gff_filter_by_feature_count_out1.gff (追加)
test-data/gops-cluster-1.bed (追加)
test-data/gops-cluster-2.bed (追加)
test-data/gops-cluster-3.bed (追加)
test-data/gops-join-both-100.dat (追加)
test-data/gops-join-both.dat (追加)
test-data/gops-join-left.dat (追加)
test-data/gops-join-none-500.dat (追加)
test-data/gops-join-none.dat (追加)
test-data/gops-join-right.dat (追加)
test-data/gops-merge.dat (追加)
test-data/gops-subtract-p.dat (追加)
test-data/gops-subtract.dat (追加)
test-data/gops_basecoverage_out.txt (追加)
test-data/gops_basecoverage_out2.txt (追加)
test-data/gops_bigint.interval (追加)
test-data/gops_bigint2.interval (追加)
test-data/gops_cluster_bigint.bed (追加)
test-data/gops_complement_out.bed (追加)
test-data/gops_complement_out2.bed (追加)
test-data/gops_complement_out_diffCols.dat (追加)
test-data/gops_concat_out1.bed (追加)
test-data/gops_concat_out2.bed (追加)
test-data/gops_coverage_out.interval (追加)
test-data/gops_coverage_out2.interval (追加)
test-data/gops_coverage_out_diffCols.interval (追加)
test-data/gops_intersect_bigint_out.interval (追加)
test-data/gops_intersect_diffCols.bed (追加)
test-data/gops_intersect_no_strand_out.bed (追加)
test-data/gops_intersect_out.bed (追加)
test-data/gops_intersect_out2.gff (追加)
test-data/gops_intersect_p_diffCols.bed (追加)
test-data/gops_intersect_p_out.bed (追加)
test-data/gops_merge_diffCols.dat (追加)
test-data/gops_merge_out2.bed (追加)
test-data/gops_subtract_bigint.bed (追加)
test-data/gops_subtract_diffCols.dat (追加)
test-data/gops_subtract_in1.gff (追加)
test-data/gops_subtract_in2.bed (追加)
test-data/gops_subtract_in2.gff (追加)
test-data/gops_subtract_out1.gff (追加)
test-data/gpass_and_beam_input.map (追加)
test-data/gpass_and_beam_input.ped (追加)
test-data/gpass_output.txt (追加)
test-data/groupby_out1.dat (追加)
test-data/groupby_out2.dat (追加)
test-data/gsummary_out1.tabular (追加)
test-data/gtf2bedgraph_in.gtf (追加)
test-data/gtf2bedgraph_out.bedgraph (追加)
test-data/hg17chr22KnownGenes.dat (追加)
test-data/histogram_in1.tabular (追加)
test-data/histogram_out1.pdf (追加)
test-data/html_file.txt (追加)
test-data/hvis_mkar_chr22.pdf (追加)
test-data/hvis_mkar_chr22.tab (追加)
test-data/illumina_full_range_as_cssanger.fastqcssanger (追加)
test-data/illumina_full_range_as_sanger.fastqsanger (追加)
test-data/illumina_full_range_as_solexa.fastqsolexa (追加)
test-data/illumina_full_range_original_illumina.fastqillumina (追加)
test-data/indel_analysis_in1.sam (追加)
test-data/indel_analysis_in2.sam (追加)
test-data/indel_analysis_out1.interval (追加)
test-data/indel_analysis_out2.interval (追加)
test-data/indel_analysis_out3.interval (追加)
test-data/indel_analysis_out4.interval (追加)
test-data/indel_sam2interval_in1.sam (追加)
test-data/indel_sam2interval_out1.interval (追加)
test-data/indel_sam2interval_out2.bed (追加)
test-data/indel_sam2interval_out3.bed (追加)
test-data/indel_table_in1.interval (追加)
test-data/indel_table_in2.interval (追加)
test-data/indel_table_in3.interval (追加)
test-data/indel_table_out1.interval (追加)
test-data/indelrates_3way.tabular (追加)
test-data/indels1.tabular (追加)
test-data/indelsFlankingSequences1.tabular (追加)
test-data/indels_3way.tabular (追加)
test-data/interval2maf_3from28way.maf (追加)
test-data/interval_maf_to_merged_fasta_out.dat (追加)
test-data/interval_maf_to_merged_fasta_out3.fasta (追加)
test-data/interval_maf_to_merged_fasta_user_out.dat (追加)
test-data/iris.tabular (追加)
test-data/joiner_out1.bed (追加)
test-data/joiner_out2.bed (追加)
test-data/joiner_out3.bed (追加)
test-data/joiner_out4.bed (追加)
test-data/kcca_out1.tabular (追加)
test-data/kcca_out2.tabular (追加)
test-data/knownGeneUpstream500Flanks.dat (追加)
test-data/kpca_out1.tabular (追加)
test-data/kpca_out2.pdf (追加)
test-data/kpca_out3.tabular (追加)
test-data/kpca_out4.pdf (追加)
test-data/lastz_census.txt (追加)
test-data/lastz_diffs.txt (追加)
test-data/lastz_diffs_ref_name.txt (追加)
test-data/lastz_maf.txt (追加)
test-data/lastz_paired_input2.fasta (追加)
test-data/lastz_paired_input3.fasta (追加)
test-data/lastz_paired_input4.qual454 (追加)
test-data/lastz_paired_out1.sam (追加)
test-data/lastz_wrapper_out2.sam (追加)
test-data/lastz_wrapper_out3.tabular (追加)
test-data/lastz_wrapper_out4.tabular (追加)
test-data/lav_to_bed_out_1.bed (追加)
test-data/lav_to_bed_out_2.bed (追加)
test-data/lca_input.taxonomy (追加)
test-data/lca_input2.taxonomy (追加)
test-data/lca_input3.taxonomy (追加)
test-data/lca_output.taxonomy (追加)
test-data/lca_output2.taxonomy (追加)
test-data/lca_output3.taxonomy (追加)
test-data/ldInput1.txt (追加)
test-data/ldOutput1.txt (追加)
test-data/lda_analy_output.txt (追加)
test-data/library (追加)
test-data/library/3.bed (追加)
test-data/library/4.bed (追加)
test-data/library/5.bed (追加)
test-data/linkToDavid.tabular (追加)
test-data/linkToDavid_1.out (追加)
test-data/linkToGProfile.tabular (追加)
test-data/linkToGProfile_1.out (追加)
test-data/lped_to_geno_output1.txt (追加)
test-data/lped_to_ld_output1.tab (追加)
test-data/lped_to_snps_output1.interval (追加)
test-data/lps_arrhythmia.tabular (追加)
test-data/lps_arrhythmia_beta.tabular (追加)
test-data/lps_arrhythmia_log.txt (追加)
test-data/maf_by_block_number_out.dat (追加)
test-data/maf_by_block_numbers.dat (追加)
test-data/maf_limit_size1_out.maf (追加)
test-data/maf_reverse_complement_out.dat (追加)
test-data/maf_split_by_species_collapsed_out.maf (追加)
test-data/maf_split_by_species_in.maf (追加)
test-data/maf_split_by_species_not_collapsed_out.maf (追加)
test-data/maf_stats_interval_in.dat (追加)
test-data/maf_stats_interval_out.dat (追加)
test-data/maf_stats_summary_out.dat (追加)
test-data/maf_thread_for_species.dat (追加)
test-data/maf_to_interval_out_hg17.interval (追加)
test-data/maf_to_interval_out_panTro1.interval (追加)
test-data/matrix_generator_for_pc_and_lda_input_1.tabular (追加)
test-data/matrix_generator_for_pc_and_lda_input_2.tabular (追加)
test-data/matrix_generator_for_pc_and_lda_output.tabular (追加)
test-data/megablast_wrapper_test1.fa (追加)
test-data/megablast_wrapper_test1.out (追加)
test-data/megablast_xml_parser_test1.gz (追加)
test-data/megablast_xml_parser_test1_out.tabular (追加)
test-data/mergeCols.dat (追加)
test-data/misc_dna_as_sanger_rev_comp_1.fastqsanger (追加)
test-data/misc_dna_original_sanger.fastqsanger (追加)
test-data/misc_rna_as_sanger_rev_comp_1.fastqsanger (追加)
test-data/misc_rna_original_sanger.fastqsanger (追加)
test-data/motifFrequencies0.tabular (追加)
test-data/motifFrequencies10.tabular (追加)
test-data/motifFrequencies_every_indels0.tabular (追加)
test-data/motifFrequencies_every_indels4.tabular (追加)
test-data/motifs1.tabular (追加)
test-data/motifs2.tabular (追加)
test-data/mutate_snp_codon_in.interval (追加)
test-data/mutate_snp_codon_out.interval (追加)
test-data/mutation_data1.txt (追加)
test-data/mutation_data1_interactive.svg (追加)
test-data/mutation_data1_zoom3x.svg (追加)
test-data/nj_tree_inp.fasta (追加)
test-data/nj_tree_newick_out.dat (追加)
test-data/nj_tree_newick_out.tabular (追加)
test-data/nj_tree_pdf_out.pdf (追加)
test-data/non_overlapping_indels1.tabular (追加)
test-data/numericalTable1.tabular (追加)
test-data/ortho_ms.tab (追加)
test-data/ortho_ms_mut.tab (追加)
test-data/p_q_hists_Q_plots.pdf (追加)
test-data/p_values.tabular (追加)
test-data/pass_input.gff (追加)
test-data/pass_output.tab (追加)
test-data/pca_out1.tabular (追加)
test-data/pca_out2.pdf (追加)
test-data/pca_out3.tabular (追加)
test-data/pca_out4.pdf (追加)
test-data/pca_out5.tabular (追加)
test-data/pca_out6.pdf (追加)
test-data/peakcalling_macs (追加)
test-data/peakcalling_macs/macs_test_1_out.bed (追加)
test-data/peakcalling_macs/macs_test_1_out.html (追加)
test-data/peakcalling_macs/macs_test_2_neg_peaks_out.interval (追加)
test-data/peakcalling_macs/macs_test_2_peaks_out.interval (追加)
test-data/peakcalling_macs/macs_test_3_control_out.wig (追加)
test-data/peakcalling_macs/macs_test_3_out.html (追加)
test-data/peakcalling_macs/macs_test_3_treatment_out.wig (追加)
test-data/peakcalling_macs/test2 (追加)
test-data/peakcalling_macs/test2/Galaxy_Test_Run_model.pdf (追加)
test-data/peakcalling_macs/test2/Galaxy_Test_Run_model.r (追加)
test-data/peakcalling_macs/test2/Galaxy_Test_Run_model.r.log (追加)
test-data/peakcalling_macs/test2/Galaxy_Test_Run_negative_peaks.xls (追加)
test-data/peakcalling_macs/test2/Galaxy_Test_Run_peaks.xls (追加)
test-data/perm_in1.fastqsanger (追加)
test-data/perm_in2.fastqsanger (追加)
test-data/perm_in3.fastqsanger (追加)
test-data/perm_in4.fastqcssanger (追加)
test-data/perm_in5.fastqcssanger (追加)
test-data/perm_in6.fastqcssanger (追加)
test-data/perm_out1.sam (追加)
test-data/perm_out2.sam (追加)
test-data/perm_out3.fastqsanger (追加)
test-data/perm_out4.sam (追加)
test-data/perm_out5.sam (追加)
test-data/phastOdds_tool_out.interval (追加)
test-data/phiX.fasta (追加)
test-data/phiX_split.fasta (追加)
test-data/pileup_interval_in1.tabular (追加)
test-data/pileup_interval_in2.tabular (追加)
test-data/pileup_interval_out1.tabular (追加)
test-data/pileup_interval_out2.tabular (追加)
test-data/pileup_parser.10col.20-3-yes-yes-yes-no.pileup.out (追加)
test-data/pileup_parser.10col.20-3-yes-yes-yes-yes.pileup.out (追加)
test-data/pileup_parser.10col.20-3-yes-yes.pileup.out (追加)
test-data/pileup_parser.10col.pileup (追加)
test-data/pileup_parser.6col.20-3-no-no.pileup.out (追加)
test-data/pileup_parser.6col.20-3-yes-no.pileup.out (追加)
test-data/pileup_parser.6col.20-3-yes-yes.pileup.out (追加)
test-data/pileup_parser.6col.40-3-yes-yes.pileup.out (追加)
test-data/pileup_parser.6col.pileup (追加)
test-data/plot_for_lda_output.pdf (追加)
test-data/poisson2test1.tabular (追加)
test-data/poisson2test1_out.tabular (追加)
test-data/poisson2test2.tabular (追加)
test-data/poisson2test2_out.tabular (追加)
test-data/q_values.tabular (追加)
test-data/qualscores.qual454 (追加)
test-data/qualscores.qualsolid (追加)
test-data/qualsolid.stats (追加)
test-data/random_phiX_1.fastqcssanger (追加)
test-data/random_phiX_1.fastqsanger (追加)
test-data/rcve_out.dat (追加)
test-data/reg_inp.tab (追加)
test-data/regr_inp.tabular (追加)
test-data/regr_out.pdf (追加)
test-data/regr_out.tabular (追加)
test-data/rgCaCotest1_CaCo.xls (追加)
test-data/rgCaCotest1_CaCo_log.txt (追加)
test-data/rgCaCotest1_CaCo_topTable.gff (追加)
test-data/rgGLMtest1_GLM.xls (追加)
test-data/rgGLMtest1_GLM_log.txt (追加)
test-data/rgGLMtest1_GLM_topTable.gff (追加)
test-data/rgQQtest1.pdf (追加)
test-data/rgTDTtest1_TDT.xls (追加)
test-data/rgTDTtest1_TDT_log.txt (追加)
test-data/rgTDTtest1_TDT_topTable.gff (追加)
test-data/rgenetics.bed (追加)
test-data/rgenetics.bim (追加)
test-data/rgenetics.fam (追加)
test-data/rgenetics.map (追加)
test-data/rgenetics.ped (追加)
test-data/rgtestouts (追加)
test-data/rgtestouts/rgClean (追加)
test-data/rgtestouts/rgClean/rgCleantest1.bed (追加)
test-data/rgtestouts/rgClean/rgCleantest1.bim (追加)
test-data/rgtestouts/rgClean/rgCleantest1.fam (追加)
test-data/rgtestouts/rgClean/rgCleantest1.log (追加)
test-data/rgtestouts/rgClean/rgCleantest1.pbed (追加)
test-data/rgtestouts/rgEigPCA (追加)
test-data/rgtestouts/rgEigPCA/Rplots.pdf (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1.R (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1.html (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1.txt (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1_PCAPlot.pdf (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1_PCAPlot.pdf.png (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1_eigensoftplot.pdf.pdf (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1_eigensoftplot.pdf.ps (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1_eigensoftplot.pdf.xtxt (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1_eval.xls (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1_log.txt (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1_pca.xls (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1_pca.xls.evec (追加)
test-data/rgtestouts/rgEigPCA/rgEigPCAtest1_pca.xls.par (追加)
test-data/rgtestouts/rgGRR (追加)
test-data/rgtestouts/rgGRR/Log_rgGRRtest1.txt (追加)
test-data/rgtestouts/rgGRR/rgGRRtest1.html (追加)
test-data/rgtestouts/rgGRR/rgGRRtest1.svg (追加)
test-data/rgtestouts/rgGRR/rgGRRtest1_table.xls (追加)
test-data/rgtestouts/rgHaploView (追加)
test-data/rgtestouts/rgHaploView/1_rgHaploViewtest1.pdf (追加)
test-data/rgtestouts/rgHaploView/1_rgHaploViewtest1.png (追加)
test-data/rgtestouts/rgHaploView/2_HapMap_YRI_22.pdf (追加)
test-data/rgtestouts/rgHaploView/2_HapMap_YRI_22.png (追加)
test-data/rgtestouts/rgHaploView/Chromosome22YRI.LD.PNG (追加)
test-data/rgtestouts/rgHaploView/Log_rgHaploViewtest1.txt (追加)
test-data/rgtestouts/rgHaploView/alljoin.pdf (追加)
test-data/rgtestouts/rgHaploView/allnup.pdf (追加)
test-data/rgtestouts/rgHaploView/rgHaploViewtest1.html (追加)
test-data/rgtestouts/rgHaploView/rgHaploViewtest1.ped.LD.PNG (追加)
test-data/rgtestouts/rgHaploView/rgHaploViewtest1.ped.TAGS (追加)
test-data/rgtestouts/rgHaploView/rgHaploViewtest1.ped.TESTS (追加)
test-data/rgtestouts/rgLDIndep (追加)
test-data/rgtestouts/rgLDIndep/rgLDIndeptest1.bed (追加)
test-data/rgtestouts/rgLDIndep/rgLDIndeptest1.bim (追加)
test-data/rgtestouts/rgLDIndep/rgLDIndeptest1.fam (追加)
test-data/rgtestouts/rgLDIndep/rgLDIndeptest1.log (追加)
test-data/rgtestouts/rgLDIndep/rgLDIndeptest1.map (追加)
test-data/rgtestouts/rgLDIndep/rgLDIndeptest1.pbed (追加)
test-data/rgtestouts/rgLDIndep/rgLDIndeptest1.ped (追加)
test-data/rgtestouts/rgLDIndep/rgLDIndeptest1.prune.in (追加)
test-data/rgtestouts/rgLDIndep/rgLDIndeptest1.prune.out (追加)
test-data/rgtestouts/rgManQQ (追加)
test-data/rgtestouts/rgManQQ/Allelep_manhattan.png (追加)
test-data/rgtestouts/rgManQQ/Allelep_qqplot.png (追加)
test-data/rgtestouts/rgManQQ/Armitagep_manhattan.png (追加)
test-data/rgtestouts/rgManQQ/Armitagep_qqplot.png (追加)
test-data/rgtestouts/rgManQQ/rgManQQtest1.R (追加)
test-data/rgtestouts/rgManQQ/rgManQQtest1.html (追加)
test-data/rgtestouts/rgPedSub (追加)
test-data/rgtestouts/rgPedSub/rgPedSubtest1.log (追加)
test-data/rgtestouts/rgPedSub/rgPedSubtest1.lped (追加)
test-data/rgtestouts/rgPedSub/tinywga.map (追加)
test-data/rgtestouts/rgPedSub/tinywga.ped (追加)
test-data/rgtestouts/rgQC (追加)
test-data/rgtestouts/rgQC/FQNormtinywga_s_het_cum.jpg (追加)
test-data/rgtestouts/rgQC/FQNormtinywga_s_het_cum.pdf (追加)
test-data/rgtestouts/rgQC/MarkerDetails_rgQCtest1.xls (追加)
test-data/rgtestouts/rgQC/QQtinywga_logphweunaff_cum.jpg (追加)
test-data/rgtestouts/rgQC/QQtinywga_logphweunaff_cum.pdf (追加)
test-data/rgtestouts/rgQC/Ranked_Marker_HWE.xls (追加)
test-data/rgtestouts/rgQC/Ranked_Marker_MAF.xls (追加)
test-data/rgtestouts/rgQC/Ranked_Marker_Missing_Genotype.xls (追加)
test-data/rgtestouts/rgQC/Ranked_Subject_Missing_Genotype.xls (追加)
test-data/rgtestouts/rgQC/SubjectDetails_rgQCtest1.xls (追加)
test-data/rgtestouts/rgQC/ldp_tinywga.bed (追加)
test-data/rgtestouts/rgQC/ldp_tinywga.bim (追加)
test-data/rgtestouts/rgQC/ldp_tinywga.fam (追加)
test-data/rgtestouts/rgQC/ldp_tinywga.log (追加)
test-data/rgtestouts/rgQC/rgQCtest1.html (追加)
test-data/rgtestouts/rgQC/tinywga.fmendel (追加)
test-data/rgtestouts/rgQC/tinywga.frq (追加)
test-data/rgtestouts/rgQC/tinywga.het (追加)
test-data/rgtestouts/rgQC/tinywga.hwe (追加)
test-data/rgtestouts/rgQC/tinywga.imendel (追加)
test-data/rgtestouts/rgQC/tinywga.imiss (追加)
test-data/rgtestouts/rgQC/tinywga.lmendel (追加)
test-data/rgtestouts/rgQC/tinywga.lmiss (追加)
test-data/rgtestouts/rgQC/tinywga.log (追加)
test-data/rgtestouts/rgQC/tinywga.mendel (追加)
test-data/rgtestouts/rgQC/tinywga.prune.in (追加)
test-data/rgtestouts/rgQC/tinywga.prune.out (追加)
test-data/rgtestouts/rgQC/tinywga.sexcheck (追加)
test-data/rgtestouts/rgQC/tinywga_All_3x3-0.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_3x3-1.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_3x3.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_3x3.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-0.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-1.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-10.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-11.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-2.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-3.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-4.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-5.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-6.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-7.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-8.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged-9.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_All_Paged.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_fracmiss.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_fracmiss.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_fracmiss_cum.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_fracmiss_cum.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_logphweunaff.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_logphweunaff.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_logphweunaff_cum.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_logphweunaff_cum.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_maf.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_maf.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_maf_cum.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_maf_cum.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_missfrac.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_missfrac.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_missfrac_cum.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_missfrac_cum.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_s_het.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_s_het.pdf (追加)
test-data/rgtestouts/rgQC/tinywga_s_het_cum.jpg (追加)
test-data/rgtestouts/rgQC/tinywga_s_het_cum.pdf (追加)
test-data/rgtestouts/rgfakePed (追加)
test-data/rgtestouts/rgfakePed/rgfakePedtest1.lped (追加)
test-data/rgtestouts/rgfakePed/rgfakePedtest1.map (追加)
test-data/rgtestouts/rgfakePed/rgfakePedtest1.ped (追加)
test-data/rgtestouts/rgfakePhe (追加)
test-data/rgtestouts/rgfakePhe/rgfakePhetest1.pphe (追加)
test-data/rgtestouts/rgfakePhe/script_file (追加)
test-data/rmap_wrapper_test1.bed (追加)
test-data/rmap_wrapper_test1.fasta (追加)
test-data/rmapq_wrapper_test1.bed (追加)
test-data/rmapq_wrapper_test1.fasta (追加)
test-data/rmapq_wrapper_test1.qual (追加)
test-data/rr.csfasta (追加)
test-data/rr.qualsolid (追加)
test-data/s2fq_out1.fastqsanger (追加)
test-data/s2fq_out2.fastqsanger (追加)
test-data/s2fq_out3.fastqsanger (追加)
test-data/s2fq_paired_F3.csfasta (追加)
test-data/s2fq_paired_F3_QV.qualsolid (追加)
test-data/s2fq_paired_R3.csfasta (追加)
test-data/s2fq_paired_R3_QV.qualsolid (追加)
test-data/s2fq_phiX.csfasta (追加)
test-data/s2fq_phiX.qualsolid (追加)
test-data/sam2interval_noprintAll.dat (追加)
test-data/sam2interval_printAll.dat (追加)
test-data/sam_bioinf_example.sam (追加)
test-data/sam_bw_filter.sam (追加)
test-data/sam_bw_filter_0002-yes.sam (追加)
test-data/sam_indel_filter_in1.sam (追加)
test-data/sam_indel_filter_in2.sam (追加)
test-data/sam_indel_filter_out1.sam (追加)
test-data/sam_indel_filter_out2.sam (追加)
test-data/sam_indel_filter_out3.sam (追加)
test-data/sam_merge_in1.bam (追加)
test-data/sam_merge_in2.bam (追加)
test-data/sam_merge_in3.bam (追加)
test-data/sam_merge_out2.bam (追加)
test-data/sam_pileup_in1.bam (追加)
test-data/sam_pileup_out1.pileup (追加)
test-data/sam_pileup_out2.pileup (追加)
test-data/sam_to_bam_out1.bam (追加)
test-data/sam_to_bam_out2.bam (追加)
test-data/sample1.tabular (追加)
test-data/sample2.tabular (追加)
test-data/sanger_full_range_as_cssanger.fastqcssanger (追加)
test-data/sanger_full_range_as_decimal_sanger.fastqsanger (追加)
test-data/sanger_full_range_as_illumina.fastqillumina (追加)
test-data/sanger_full_range_as_rna.fastqsanger (追加)
test-data/sanger_full_range_as_solexa.fastqsolexa (追加)
test-data/sanger_full_range_as_tab_decimal_sanger.fastqsanger (追加)
test-data/sanger_full_range_empty_reads.fastqsanger (追加)
test-data/sanger_full_range_masked_N.fastqsanger (追加)
test-data/sanger_full_range_masked_lowercase.fastqsanger (追加)
test-data/sanger_full_range_original_sanger.fastqsanger (追加)
test-data/sanger_full_range_quality_trimmed_out_1.fastqsanger (追加)
test-data/sanger_full_range_quality_trimmed_out_2.fastqsanger (追加)
test-data/sanger_full_range_quality_trimmed_out_3.fastqsanger (追加)
test-data/sanger_full_range_rev_comp.fastqsanger (追加)
test-data/sanger_full_range_rev_comp_1_seq.fastqsanger (追加)
test-data/sc_3D_cds.bed (追加)
test-data/scatterplot_in1.tabular (追加)
test-data/scatterplot_out1.pdf (追加)
test-data/sff_converter_fasta.dat (追加)
test-data/sff_converter_fastq.dat (追加)
test-data/sff_converter_qual.dat (追加)
test-data/sff_converter_xml_1.dat (追加)
test-data/sff_converter_xml_2.dat (追加)
test-data/short_reads_trim_seq_out1.fasta (追加)
test-data/short_reads_trim_seq_out2.fasta (追加)
test-data/shrimp_cs_test1.csfasta (追加)
test-data/shrimp_cs_test1.out (追加)
test-data/shrimp_phix_anc.fa (追加)
test-data/shrimp_wrapper_test1.fastq (追加)
test-data/shrimp_wrapper_test1.out1 (追加)
test-data/sift_variants.tab (追加)
test-data/sift_variants_result.tab (追加)
test-data/smallwgaP.xls (追加)
test-data/snpFreqInput.txt (追加)
test-data/snpFreqTestOut.txt (追加)
test-data/solexa.fasta (追加)
test-data/solexa.qual (追加)
test-data/solexa.tabular (追加)
test-data/solexaLength.txt (追加)
test-data/solexaScore.pdf (追加)
test-data/solexaScore.png (追加)
test-data/solexa_full_range_as_cssanger.fastqcssanger (追加)
test-data/solexa_full_range_as_decimal_solexa.fastqsolexa (追加)
test-data/solexa_full_range_as_illumina.fastqillumina (追加)
test-data/solexa_full_range_as_sanger.fastqsanger (追加)
test-data/solexa_full_range_original_solexa.fastqsolexa (追加)
test-data/solexa_high_quality_hist.pdf (追加)
test-data/solid2fastq_out_1.fastq (追加)
test-data/solid2fastq_out_2.fastq (追加)
test-data/solid2fastq_out_3.fastq (追加)
test-data/sort_in1.bed (追加)
test-data/sort_out1.bed (追加)
test-data/sort_out2.bed (追加)
test-data/split_pair_reads_1.fastqsanger (追加)
test-data/split_pair_reads_2.fastqsanger (追加)
test-data/srma_in1.bam (追加)
test-data/srma_in2.fa (追加)
test-data/srma_in3.bam (追加)
test-data/srma_out1.bam (追加)
test-data/srma_out2.bam (追加)
test-data/statcked_bars_plot.pdf (追加)
test-data/subRates1.out (追加)
test-data/subs.out (追加)
test-data/subtract-query-1.dat (追加)
test-data/subtract-query-2.dat (追加)
test-data/subtract-query-3.dat (追加)
test-data/subtract-query-4.dat (追加)
test-data/t2t_report.tabular (追加)
test-data/t_test_result1.text (追加)
test-data/t_test_result2.text (追加)
test-data/t_test_result3.text (追加)
test-data/t_test_result4.text (追加)
test-data/t_test_result5.text (追加)
test-data/t_test_result6.text (追加)
test-data/table_addition_result.tabular (追加)
test-data/table_division_result.tabular (追加)
test-data/table_multiplication_result.tabular (追加)
test-data/table_subtraction_result.tabular (追加)
test-data/tabular_to_fasta_out1.fasta (追加)
test-data/taxonomy2gi-input.tabular (追加)
test-data/taxonomy2gi-output.tabular (追加)
test-data/taxonomyGI.tabular (追加)
test-data/taxonomyGI.taxonomy (追加)
test-data/tinywga.bed (追加)
test-data/tinywga.bim (追加)
test-data/tinywga.fam (追加)
test-data/tinywga.map (追加)
test-data/tinywga.ped (追加)
test-data/tinywga.ped.space_to_tab (追加)
test-data/tinywga.pphe (追加)
test-data/tophat_in1.fq (追加)
test-data/tophat_in2.fq (追加)
test-data/tophat_in3.fa (追加)
test-data/tophat_out1.sam (追加)
test-data/tophat_out2.wig (追加)
test-data/tophat_out3.bed (追加)
test-data/trimmer_a_f_c0_s1_e13_i62.dat (追加)
test-data/trimmer_a_f_c2_s1_e2_i62.dat (追加)
test-data/trimmer_tab_delimited.dat (追加)
test-data/uniq_out.dat (追加)
test-data/users (追加)
test-data/users/test1@bx.psu.edu (追加)
test-data/users/test1@bx.psu.edu/1.fasta (追加)
test-data/users/test3@bx.psu.edu (追加)
test-data/users/test3@bx.psu.edu/run1 (追加)
test-data/users/test3@bx.psu.edu/run1/2.fasta (追加)
test-data/velvet_test_long.fa (追加)
test-data/velvet_test_reads.fa (追加)
test-data/velvet_test_reference.fa (追加)
test-data/velvetg_test1 (追加)
test-data/velvetg_test1/amos.afg (追加)
test-data/velvetg_test1/contigs.fa (追加)
test-data/velvetg_test1/lastgraph.txt (追加)
test-data/velvetg_test1/stats.csv (追加)
test-data/velvetg_test1/unusedreads.fa (追加)
test-data/velveth_test1 (追加)
test-data/velveth_test1/Log (追加)
test-data/velveth_test1/Roadmaps (追加)
test-data/velveth_test1/Sequences (追加)
test-data/velveth_test1/output.html (追加)
test-data/wig_to_bigwig_hg17.len (追加)
test-data/wrapping_as_illumina.fastqillumina (追加)
test-data/wrapping_as_sanger.fastqsanger (追加)
test-data/wrapping_as_sanger_decimal.fastqsanger (追加)
test-data/wrapping_as_solexa.fastqsolexa (追加)
test-data/wrapping_original_sanger.fastqsanger (追加)
test/base (追加)
test/base/__init__.py (追加)
test/base/test_db_util.py (追加)
test/base/twilltestcase.py (追加)
test/functional (追加)
test/functional/__init__.py (追加)
test/functional/test_DNAse_flanked_genes.py (追加)
test/functional/test_admin_features.py (追加)
test/functional/test_data_security.py (追加)
test/functional/test_forms_and_requests.py (追加)
test/functional/test_get_data.py (追加)
test/functional/test_history_functions.py (追加)
test/functional/test_library_features.py (追加)
test/functional/test_library_security.py (追加)
test/functional/test_library_templates.py (追加)
test/functional/test_metadata_editing.py (追加)
test/functional/test_tags.py (追加)
test/functional/test_toolbox.py (追加)
test/functional/test_user_info.py (追加)
test/selenium (追加)
test/selenium/root (追加)
test/selenium/root/Login.html (追加)
test/selenium/root/Suite.html (追加)
test/selenium/root/UserRegistration.html (追加)
test/selenium/visualization (追加)
test/selenium/visualization/Trackster.html (追加)
test/selenium/workflow (追加)
test/selenium/workflow/CreateSimpleWorkflow.html (追加)
test/selenium/workflow/CreateUser.html (追加)
test/selenium/workflow/CreateWorkflowWithGroupingAndRuntimeParameters.html (追加)
test/selenium/workflow/RunWorkflowWithGroupingAndRuntimeParameters.html (追加)
test/selenium/workflow/Suite.html (追加)
test/selenium/workflow/VerifyRunSimpleWorkflow.html (追加)
tool-data (追加)
tool-data/add_scores.loc.sample (追加)
tool-data/alignseq.loc.sample (追加)
tool-data/annotation_profiler_options.xml.sample (追加)
tool-data/annotation_profiler_valid_builds.txt.sample (追加)
tool-data/bfast_indexes.loc.sample (追加)
tool-data/binned_scores.loc.sample (追加)
tool-data/blastdb.loc.sample (追加)
tool-data/blastdb_p.loc.sample (追加)
tool-data/bowtie_indices.loc.sample (追加)
tool-data/bowtie_indices_color.loc.sample (追加)
tool-data/bwa_index.loc.sample (追加)
tool-data/codingSnps.loc.sample (追加)
tool-data/encode_datasets.loc.sample (追加)
tool-data/faseq.loc.sample (追加)
tool-data/fastx_clipper_sequences.txt (追加)
tool-data/funDo.loc.sample (追加)
tool-data/lastz_seqs.loc.sample (追加)
tool-data/liftOver.loc.sample (追加)
tool-data/maf_index.loc.sample (追加)
tool-data/maf_pairwise.loc.sample (追加)
tool-data/microbial_data.loc.sample (追加)
tool-data/perm_base_index.loc.sample (追加)
tool-data/perm_color_index.loc.sample (追加)
tool-data/phastOdds.loc.sample (追加)
tool-data/quality_scores.loc.sample (追加)
tool-data/regions.loc.sample (追加)
tool-data/sam_fa_indices.loc.sample (追加)
tool-data/sequence_index_base.loc.sample (追加)
tool-data/sequence_index_color.loc.sample (追加)
tool-data/shared (追加)
tool-data/shared/ensembl (追加)
tool-data/shared/ensembl/ensembl_sites.txt (追加)
tool-data/shared/ensembl/ensembl_sites_data_URL.txt (追加)
tool-data/shared/gbrowse (追加)
tool-data/shared/gbrowse/gbrowse_build_sites.txt (追加)
tool-data/shared/genetrack (追加)
tool-data/shared/genetrack/genetrack_sites.txt (追加)
tool-data/shared/ucsc (追加)
tool-data/shared/ucsc/builds.txt.sample (追加)
tool-data/shared/ucsc/manual_builds.txt (追加)
tool-data/shared/ucsc/ucsc_build_sites.txt (追加)
tool-data/sift_db.loc.sample (追加)
tool-data/srma_index.loc.sample (追加)
tool-data/twobit.loc.sample (追加)
tool_conf.xml.main (追加)
tool_conf.xml.sample (追加)
tool_data_table_conf.xml.sample (追加)
tool_list.py (追加)
tools (追加)
tools/annotation_profiler (追加)
tools/annotation_profiler/annotation_profiler.xml (追加)
tools/annotation_profiler/annotation_profiler_for_interval.py (追加)
tools/data_destination (追加)
tools/data_destination/epigraph.xml (追加)
tools/data_destination/epigraph_test.xml (追加)
tools/data_source (追加)
tools/data_source/access_libraries.xml (追加)
tools/data_source/bed_convert.xml (追加)
tools/data_source/biomart.xml (追加)
tools/data_source/biomart_test.xml (追加)
tools/data_source/bx_browser.xml (追加)
tools/data_source/cbi_rice_mart.xml (追加)
tools/data_source/data_source.py (追加)
tools/data_source/echo.py (追加)
tools/data_source/echo.xml (追加)
tools/data_source/encode_db.xml (追加)
tools/data_source/epigraph_import.xml (追加)
tools/data_source/epigraph_import_test.xml (追加)
tools/data_source/eupathdb.xml (追加)
tools/data_source/fetch.py (追加)
tools/data_source/fly_modencode.xml (追加)
tools/data_source/flymine.xml (追加)
tools/data_source/flymine_test.xml (追加)
tools/data_source/genbank.py (追加)
tools/data_source/genbank.xml (追加)
tools/data_source/gramene_mart.xml (追加)
tools/data_source/hbvar.xml (追加)
tools/data_source/hbvar_filter.py (追加)
tools/data_source/import.py (追加)
tools/data_source/import.xml (追加)
tools/data_source/microbial_import.py (追加)
tools/data_source/microbial_import.xml (追加)
tools/data_source/microbial_import_code.py (追加)
tools/data_source/modmine.xml (追加)
tools/data_source/ratmine.xml (追加)
tools/data_source/ucsc_archaea.xml (追加)
tools/data_source/ucsc_filter.py (追加)
tools/data_source/ucsc_proxy.py (追加)
tools/data_source/ucsc_proxy.xml (追加)
tools/data_source/ucsc_tablebrowser.xml (追加)
tools/data_source/ucsc_tablebrowser_archaea.xml (追加)
tools/data_source/ucsc_tablebrowser_test.xml (追加)
tools/data_source/ucsc_testproxy.xml (追加)
tools/data_source/upload.py (追加)
tools/data_source/upload.xml (追加)
tools/data_source/worm_modencode.xml (追加)
tools/data_source/wormbase.xml (追加)
tools/data_source/wormbase_test.xml (追加)
tools/discreteWavelet (追加)
tools/discreteWavelet/execute_dwt_IvC_all.pl (追加)
tools/discreteWavelet/execute_dwt_IvC_all.xml (追加)
tools/discreteWavelet/execute_dwt_cor_aVa_perClass.pl (追加)
tools/discreteWavelet/execute_dwt_cor_aVa_perClass.xml (追加)
tools/discreteWavelet/execute_dwt_cor_aVb_all.pl (追加)
tools/discreteWavelet/execute_dwt_cor_aVb_all.xml (追加)
tools/discreteWavelet/execute_dwt_var_perClass.pl (追加)
tools/discreteWavelet/execute_dwt_var_perClass.xml (追加)
tools/emboss_5 (追加)
tools/emboss_5/emboss_antigenic.xml (追加)
tools/emboss_5/emboss_backtranseq.xml (追加)
tools/emboss_5/emboss_banana.pl (追加)
tools/emboss_5/emboss_banana.xml (追加)
tools/emboss_5/emboss_biosed.xml (追加)
tools/emboss_5/emboss_btwisted.xml (追加)
tools/emboss_5/emboss_cai.xml (追加)
tools/emboss_5/emboss_cai_custom.xml (追加)
tools/emboss_5/emboss_chaos.xml (追加)
tools/emboss_5/emboss_charge.xml (追加)
tools/emboss_5/emboss_checktrans.xml (追加)
tools/emboss_5/emboss_chips.xml (追加)
tools/emboss_5/emboss_cirdna.xml (追加)
tools/emboss_5/emboss_codcmp.xml (追加)
tools/emboss_5/emboss_coderet.xml (追加)
tools/emboss_5/emboss_compseq.xml (追加)
tools/emboss_5/emboss_cpgplot.xml (追加)
tools/emboss_5/emboss_cpgplot_wrapper.pl (追加)
tools/emboss_5/emboss_cpgreport.xml (追加)
tools/emboss_5/emboss_cusp.xml (追加)
tools/emboss_5/emboss_cutseq.xml (追加)
tools/emboss_5/emboss_dan.xml (追加)
tools/emboss_5/emboss_degapseq.xml (追加)
tools/emboss_5/emboss_descseq.xml (追加)
tools/emboss_5/emboss_diffseq.xml (追加)
tools/emboss_5/emboss_digest.xml (追加)
tools/emboss_5/emboss_dotmatcher.xml (追加)
tools/emboss_5/emboss_dotpath.xml (追加)
tools/emboss_5/emboss_dottup.xml (追加)
tools/emboss_5/emboss_dreg.xml (追加)
tools/emboss_5/emboss_einverted.xml (追加)
tools/emboss_5/emboss_epestfind.xml (追加)
tools/emboss_5/emboss_equicktandem.xml (追加)
tools/emboss_5/emboss_est2genome.xml (追加)
tools/emboss_5/emboss_etandem.xml (追加)
tools/emboss_5/emboss_extractfeat.xml (追加)
tools/emboss_5/emboss_extractseq.xml (追加)
tools/emboss_5/emboss_format_corrector.py (追加)
tools/emboss_5/emboss_freak.xml (追加)
tools/emboss_5/emboss_fuzznuc.xml (追加)
tools/emboss_5/emboss_fuzzpro.xml (追加)
tools/emboss_5/emboss_fuzztran.xml (追加)
tools/emboss_5/emboss_garnier.xml (追加)
tools/emboss_5/emboss_geecee.xml (追加)
tools/emboss_5/emboss_getorf.xml (追加)
tools/emboss_5/emboss_helixturnhelix.xml (追加)
tools/emboss_5/emboss_hmoment.xml (追加)
tools/emboss_5/emboss_iep.xml (追加)
tools/emboss_5/emboss_infoseq.xml (追加)
tools/emboss_5/emboss_infoseq_wrapper.pl (追加)
tools/emboss_5/emboss_isochore.xml (追加)
tools/emboss_5/emboss_lindna.xml (追加)
tools/emboss_5/emboss_marscan.xml (追加)
tools/emboss_5/emboss_maskfeat.xml (追加)
tools/emboss_5/emboss_maskseq.xml (追加)
tools/emboss_5/emboss_matcher.xml (追加)
tools/emboss_5/emboss_megamerger.xml (追加)
tools/emboss_5/emboss_merger.xml (追加)
tools/emboss_5/emboss_msbar.xml (追加)
tools/emboss_5/emboss_multiple_outputfile_wrapper.pl (追加)
tools/emboss_5/emboss_needle.xml (追加)
tools/emboss_5/emboss_newcpgreport.xml (追加)
tools/emboss_5/emboss_newcpgseek.xml (追加)
tools/emboss_5/emboss_newseq.xml (追加)
tools/emboss_5/emboss_noreturn.xml (追加)
tools/emboss_5/emboss_notseq.xml (追加)
tools/emboss_5/emboss_nthseq.xml (追加)
tools/emboss_5/emboss_octanol.xml (追加)
tools/emboss_5/emboss_oddcomp.xml (追加)
tools/emboss_5/emboss_palindrome.xml (追加)
tools/emboss_5/emboss_pasteseq.xml (追加)
tools/emboss_5/emboss_patmatdb.xml (追加)
tools/emboss_5/emboss_pepcoil.xml (追加)
tools/emboss_5/emboss_pepinfo.xml (追加)
tools/emboss_5/emboss_pepnet.xml (追加)
tools/emboss_5/emboss_pepstats.xml (追加)
tools/emboss_5/emboss_pepwheel.xml (追加)
tools/emboss_5/emboss_pepwindow.xml (追加)
tools/emboss_5/emboss_pepwindowall.xml (追加)
tools/emboss_5/emboss_plotcon.xml (追加)
tools/emboss_5/emboss_plotorf.xml (追加)
tools/emboss_5/emboss_polydot.xml (追加)
tools/emboss_5/emboss_preg.xml (追加)
tools/emboss_5/emboss_prettyplot.xml (追加)
tools/emboss_5/emboss_prettyseq.xml (追加)
tools/emboss_5/emboss_primersearch.xml (追加)
tools/emboss_5/emboss_revseq.xml (追加)
tools/emboss_5/emboss_seqmatchall.xml (追加)
tools/emboss_5/emboss_seqret.xml (追加)
tools/emboss_5/emboss_showfeat.xml (追加)
tools/emboss_5/emboss_shuffleseq.xml (追加)
tools/emboss_5/emboss_sigcleave.xml (追加)
tools/emboss_5/emboss_single_outputfile_wrapper.pl (追加)
tools/emboss_5/emboss_sirna.xml (追加)
tools/emboss_5/emboss_sixpack.xml (追加)
tools/emboss_5/emboss_skipseq.xml (追加)
tools/emboss_5/emboss_splitter.xml (追加)
tools/emboss_5/emboss_supermatcher.xml (追加)
tools/emboss_5/emboss_syco.xml (追加)
tools/emboss_5/emboss_tcode.xml (追加)
tools/emboss_5/emboss_textsearch.xml (追加)
tools/emboss_5/emboss_tmap.xml (追加)
tools/emboss_5/emboss_tranalign.xml (追加)
tools/emboss_5/emboss_transeq.xml (追加)
tools/emboss_5/emboss_trimest.xml (追加)
tools/emboss_5/emboss_trimseq.xml (追加)
tools/emboss_5/emboss_twofeat.xml (追加)
tools/emboss_5/emboss_union.xml (追加)
tools/emboss_5/emboss_vectorstrip.xml (追加)
tools/emboss_5/emboss_water.xml (追加)
tools/emboss_5/emboss_wobble.xml (追加)
tools/emboss_5/emboss_wordcount.xml (追加)
tools/emboss_5/emboss_wordmatch.xml (追加)
tools/encode (追加)
tools/encode/gencode_partition.xml (追加)
tools/encode/random_intervals.xml (追加)
tools/encode/random_intervals_no_bits.py (追加)
tools/encode/split_by_partitions.py (追加)
tools/evolution (追加)
tools/evolution/add_scores.xml (追加)
tools/evolution/codingSnps.pl (追加)
tools/evolution/codingSnps.xml (追加)
tools/evolution/codingSnps_filter.py (追加)
tools/evolution/mutate_snp_codon.py (追加)
tools/evolution/mutate_snp_codon.xml (追加)
tools/extract (追加)
tools/extract/extract_genomic_dna.py (追加)
tools/extract/extract_genomic_dna.xml (追加)
tools/extract/liftOver_wrapper.py (追加)
tools/extract/liftOver_wrapper.xml (追加)
tools/extract/phastOdds (追加)
tools/extract/phastOdds/get_scores_galaxy.py (追加)
tools/extract/phastOdds/phastOdds_tool.xml (追加)
tools/fasta_tools (追加)
tools/fasta_tools/fasta_compute_length.py (追加)
tools/fasta_tools/fasta_compute_length.xml (追加)
tools/fasta_tools/fasta_concatenate_by_species.py (追加)
tools/fasta_tools/fasta_concatenate_by_species.xml (追加)
tools/fasta_tools/fasta_filter_by_length.py (追加)
tools/fasta_tools/fasta_filter_by_length.xml (追加)
tools/fasta_tools/fasta_to_tabular.py (追加)
tools/fasta_tools/fasta_to_tabular.xml (追加)
tools/fasta_tools/tabular_to_fasta.py (追加)
tools/fasta_tools/tabular_to_fasta.xml (追加)
tools/fastq (追加)
tools/fastq/fastq_combiner.py (追加)
tools/fastq/fastq_combiner.xml (追加)
tools/fastq/fastq_filter.py (追加)
tools/fastq/fastq_filter.xml (追加)
tools/fastq/fastq_groomer.py (追加)
tools/fastq/fastq_groomer.xml (追加)
tools/fastq/fastq_manipulation.py (追加)
tools/fastq/fastq_manipulation.xml (追加)
tools/fastq/fastq_masker_by_quality.py (追加)
tools/fastq/fastq_masker_by_quality.xml (追加)
tools/fastq/fastq_paired_end_joiner.py (追加)
tools/fastq/fastq_paired_end_joiner.xml (追加)
tools/fastq/fastq_paired_end_splitter.py (追加)
tools/fastq/fastq_paired_end_splitter.xml (追加)
tools/fastq/fastq_stats.py (追加)
tools/fastq/fastq_stats.xml (追加)
tools/fastq/fastq_to_fasta.py (追加)
tools/fastq/fastq_to_fasta.xml (追加)
tools/fastq/fastq_to_tabular.py (追加)
tools/fastq/fastq_to_tabular.xml (追加)
tools/fastq/fastq_trimmer.py (追加)
tools/fastq/fastq_trimmer.xml (追加)
tools/fastq/fastq_trimmer_by_quality.py (追加)
tools/fastq/fastq_trimmer_by_quality.xml (追加)
tools/fastq/tabular_to_fastq.py (追加)
tools/fastq/tabular_to_fastq.xml (追加)
tools/fastx_toolkit (追加)
tools/fastx_toolkit/fasta_clipping_histogram.xml (追加)
tools/fastx_toolkit/fasta_formatter.xml (追加)
tools/fastx_toolkit/fasta_nucleotide_changer.xml (追加)
tools/fastx_toolkit/fastq_quality_boxplot.xml (追加)
tools/fastx_toolkit/fastq_quality_converter.xml (追加)
tools/fastx_toolkit/fastq_quality_filter.xml (追加)
tools/fastx_toolkit/fastq_to_fasta.xml (追加)
tools/fastx_toolkit/fastx_artifacts_filter.xml (追加)
tools/fastx_toolkit/fastx_barcode_splitter.xml (追加)
tools/fastx_toolkit/fastx_barcode_splitter_galaxy_wrapper.sh (追加)
tools/fastx_toolkit/fastx_clipper.xml (追加)
tools/fastx_toolkit/fastx_collapser.xml (追加)
tools/fastx_toolkit/fastx_nucleotides_distribution.xml (追加)
tools/fastx_toolkit/fastx_quality_statistics.xml (追加)
tools/fastx_toolkit/fastx_renamer.xml (追加)
tools/fastx_toolkit/fastx_reverse_complement.xml (追加)
tools/fastx_toolkit/fastx_trimmer.xml (追加)
tools/filters (追加)
tools/filters/CreateInterval.pl (追加)
tools/filters/CreateInterval.xml (追加)
tools/filters/axt_to_concat_fasta.py (追加)
tools/filters/axt_to_concat_fasta.xml (追加)
tools/filters/axt_to_fasta.py (追加)
tools/filters/axt_to_fasta.xml (追加)
tools/filters/axt_to_lav.py (追加)
tools/filters/axt_to_lav.xml (追加)
tools/filters/axt_to_lav_code.py (追加)
tools/filters/bed2gff.xml (追加)
tools/filters/bed_to_gff_converter.py (追加)
tools/filters/catWrapper.py (追加)
tools/filters/catWrapper.xml (追加)
tools/filters/changeCase.pl (追加)
tools/filters/changeCase.xml (追加)
tools/filters/commWrapper.pl (追加)
tools/filters/commWrapper.xml (追加)
tools/filters/compare.xml (追加)
tools/filters/condense_characters.pl (追加)
tools/filters/condense_characters.xml (追加)
tools/filters/convert_characters.pl (追加)
tools/filters/convert_characters.py (追加)
tools/filters/convert_characters.xml (追加)
tools/filters/cutWrapper.pl (追加)
tools/filters/cutWrapper.xml (追加)
tools/filters/fileGrep.xml (追加)
tools/filters/fixedValueColumn.pl (追加)
tools/filters/fixedValueColumn.xml (追加)
tools/filters/gff (追加)
tools/filters/gff/extract_GFF_Features.py (追加)
tools/filters/gff/extract_GFF_Features.xml (追加)
tools/filters/gff/gff_filter_by_attribute.py (追加)
tools/filters/gff/gff_filter_by_attribute.xml (追加)
tools/filters/gff/gff_filter_by_feature_count.py (追加)
tools/filters/gff/gff_filter_by_feature_count.xml (追加)
tools/filters/gff2bed.xml (追加)
tools/filters/gff_to_bed_converter.py (追加)
tools/filters/grep.py (追加)
tools/filters/grep.xml (追加)
tools/filters/gtf2bedgraph.xml (追加)
tools/filters/gtf_to_bedgraph_converter.py (追加)
tools/filters/headWrapper.pl (追加)
tools/filters/headWrapper.xml (追加)
tools/filters/join.py (追加)
tools/filters/joinWrapper.pl (追加)
tools/filters/joinWrapper.py (追加)
tools/filters/joiner.xml (追加)
tools/filters/joiner2.xml (追加)
tools/filters/lav_to_bed.py (追加)
tools/filters/lav_to_bed.xml (追加)
tools/filters/lav_to_bed_code.py (追加)
tools/filters/mergeCols.py (追加)
tools/filters/mergeCols.xml (追加)
tools/filters/pasteWrapper.pl (追加)
tools/filters/pasteWrapper.xml (追加)
tools/filters/randomlines.py (追加)
tools/filters/randomlines.xml (追加)
tools/filters/remove_beginning.pl (追加)
tools/filters/remove_beginning.xml (追加)
tools/filters/sff_extract.py (追加)
tools/filters/sff_extractor.xml (追加)
tools/filters/sorter.py (追加)
tools/filters/sorter.xml (追加)
tools/filters/tailWrapper.pl (追加)
tools/filters/tailWrapper.xml (追加)
tools/filters/trimmer.py (追加)
tools/filters/trimmer.xml (追加)
tools/filters/ucsc_gene_bed_to_exon_bed.py (追加)
tools/filters/ucsc_gene_bed_to_exon_bed.xml (追加)
tools/filters/ucsc_gene_bed_to_intron_bed.py (追加)
tools/filters/ucsc_gene_bed_to_intron_bed.xml (追加)
tools/filters/ucsc_gene_table_to_intervals.py (追加)
tools/filters/ucsc_gene_table_to_intervals.xml (追加)
tools/filters/uniq.py (追加)
tools/filters/uniq.xml (追加)
tools/filters/wig_to_bigwig.xml (追加)
tools/filters/wiggle_to_simple.py (追加)
tools/filters/wiggle_to_simple.xml (追加)
tools/genetrack (追加)
tools/genetrack/genetrack_indexer.py (追加)
tools/genetrack/genetrack_indexer.xml (追加)
tools/genetrack/genetrack_peak_prediction.py (追加)
tools/genetrack/genetrack_peak_prediction.xml (追加)
tools/human_genome_variation (追加)
tools/human_genome_variation/BEAM2_wrapper.sh (追加)
tools/human_genome_variation/beam.xml (追加)
tools/human_genome_variation/ctd.pl (追加)
tools/human_genome_variation/ctd.xml (追加)
tools/human_genome_variation/disease_ontology_gene_fuzzy_selector.pl (追加)
tools/human_genome_variation/funDo.xml (追加)
tools/human_genome_variation/gpass.pl (追加)
tools/human_genome_variation/gpass.xml (追加)
tools/human_genome_variation/hilbertvis.sh (追加)
tools/human_genome_variation/hilbertvis.xml (追加)
tools/human_genome_variation/ldtools.xml (追加)
tools/human_genome_variation/ldtools_wrapper.sh (追加)
tools/human_genome_variation/linkToDavid.pl (追加)
tools/human_genome_variation/linkToDavid.xml (追加)
tools/human_genome_variation/linkToGProfile.pl (追加)
tools/human_genome_variation/linkToGProfile.xml (追加)
tools/human_genome_variation/lped_to_geno.pl (追加)
tools/human_genome_variation/lps.xml (追加)
tools/human_genome_variation/lps_tool_wrapper.sh (追加)
tools/human_genome_variation/mergeSnps.pl (追加)
tools/human_genome_variation/pagetag.py (追加)
tools/human_genome_variation/pass.xml (追加)
tools/human_genome_variation/pass_wrapper.sh (追加)
tools/human_genome_variation/senatag.py (追加)
tools/human_genome_variation/sift.xml (追加)
tools/human_genome_variation/sift_variants_wrapper.sh (追加)
tools/human_genome_variation/snpFreq.xml (追加)
tools/human_genome_variation/snpFreq2.pl (追加)
tools/hyphy (追加)
tools/hyphy/hyphy_branch_lengths_wrapper.py (追加)
tools/hyphy/hyphy_branch_lengths_wrapper.xml (追加)
tools/hyphy/hyphy_dnds_wrapper.py (追加)
tools/hyphy/hyphy_dnds_wrapper.xml (追加)
tools/hyphy/hyphy_nj_tree_wrapper.py (追加)
tools/hyphy/hyphy_nj_tree_wrapper.xml (追加)
tools/indels (追加)
tools/indels/indel_analysis.py (追加)
tools/indels/indel_analysis.xml (追加)
tools/indels/indel_sam2interval.py (追加)
tools/indels/indel_sam2interval.xml (追加)
tools/indels/indel_table.py (追加)
tools/indels/indel_table.xml (追加)
tools/indels/sam_indel_filter.py (追加)
tools/indels/sam_indel_filter.xml (追加)
tools/maf (追加)
tools/maf/genebed_maf_to_fasta.xml (追加)
tools/maf/interval2maf.py (追加)
tools/maf/interval2maf.xml (追加)
tools/maf/interval2maf_pairwise.xml (追加)
tools/maf/interval_maf_to_merged_fasta.py (追加)
tools/maf/interval_maf_to_merged_fasta.xml (追加)
tools/maf/maf_by_block_number.py (追加)
tools/maf/maf_by_block_number.xml (追加)
tools/maf/maf_filter.py (追加)
tools/maf/maf_filter.xml (追加)
tools/maf/maf_limit_size.py (追加)
tools/maf/maf_limit_size.xml (追加)
tools/maf/maf_limit_to_species.py (追加)
tools/maf/maf_limit_to_species.xml (追加)
tools/maf/maf_reverse_complement.py (追加)
tools/maf/maf_reverse_complement.xml (追加)
tools/maf/maf_split_by_species.py (追加)
tools/maf/maf_split_by_species.xml (追加)
tools/maf/maf_stats.py (追加)
tools/maf/maf_stats.xml (追加)
tools/maf/maf_thread_for_species.py (追加)
tools/maf/maf_thread_for_species.xml (追加)
tools/maf/maf_to_bed.py (追加)
tools/maf/maf_to_bed.xml (追加)
tools/maf/maf_to_bed_code.py (追加)
tools/maf/maf_to_fasta.xml (追加)
tools/maf/maf_to_fasta_concat.py (追加)
tools/maf/maf_to_fasta_multiple_sets.py (追加)
tools/maf/maf_to_interval.py (追加)
tools/maf/maf_to_interval.xml (追加)
tools/maf/vcf_to_maf_customtrack.py (追加)
tools/maf/vcf_to_maf_customtrack.xml (追加)
tools/metag_tools (追加)
tools/metag_tools/blat_coverage_report.py (追加)
tools/metag_tools/blat_coverage_report.xml (追加)
tools/metag_tools/blat_mapping.py (追加)
tools/metag_tools/blat_mapping.xml (追加)
tools/metag_tools/blat_wrapper.py (追加)
tools/metag_tools/blat_wrapper.xml (追加)
tools/metag_tools/convert_SOLiD_color2nuc.py (追加)
tools/metag_tools/convert_SOLiD_color2nuc.xml (追加)
tools/metag_tools/fastqsolexa_to_fasta_qual.py (追加)
tools/metag_tools/fastqsolexa_to_fasta_qual.xml (追加)
tools/metag_tools/mapping_to_ucsc.py (追加)
tools/metag_tools/mapping_to_ucsc.xml (追加)
tools/metag_tools/megablast_wrapper.py (追加)
tools/metag_tools/megablast_wrapper.xml (追加)
tools/metag_tools/megablast_xml_parser.py (追加)
tools/metag_tools/megablast_xml_parser.xml (追加)
tools/metag_tools/rmap_wrapper.py (追加)
tools/metag_tools/rmap_wrapper.xml (追加)
tools/metag_tools/rmapq_wrapper.py (追加)
tools/metag_tools/rmapq_wrapper.xml (追加)
tools/metag_tools/short_reads_figure_high_quality_length.py (追加)
tools/metag_tools/short_reads_figure_high_quality_length.xml (追加)
tools/metag_tools/short_reads_figure_score.py (追加)
tools/metag_tools/short_reads_figure_score.xml (追加)
tools/metag_tools/short_reads_trim_seq.py (追加)
tools/metag_tools/short_reads_trim_seq.xml (追加)
tools/metag_tools/shrimp_color_wrapper.py (追加)
tools/metag_tools/shrimp_color_wrapper.xml (追加)
tools/metag_tools/shrimp_wrapper.py (追加)
tools/metag_tools/shrimp_wrapper.xml (追加)
tools/metag_tools/split_paired_reads.py (追加)
tools/metag_tools/split_paired_reads.xml (追加)
tools/multivariate_stats (追加)
tools/multivariate_stats/cca.py (追加)
tools/multivariate_stats/cca.xml (追加)
tools/multivariate_stats/kcca.py (追加)
tools/multivariate_stats/kcca.xml (追加)
tools/multivariate_stats/kpca.py (追加)
tools/multivariate_stats/kpca.xml (追加)
tools/multivariate_stats/pca.py (追加)
tools/multivariate_stats/pca.xml (追加)
tools/mutation (追加)
tools/mutation/visualize.py (追加)
tools/mutation/visualize.xml (追加)
tools/ncbi_blast_plus (追加)
tools/ncbi_blast_plus/blast_filter_fasta.py (追加)
tools/ncbi_blast_plus/blast_filter_fasta.xml (追加)
tools/ncbi_blast_plus/blastxml_to_tabular.py (追加)
tools/ncbi_blast_plus/blastxml_to_tabular.xml (追加)
tools/ncbi_blast_plus/ncbi_blastn_wrapper.xml (追加)
tools/ncbi_blast_plus/ncbi_blastp_wrapper.xml (追加)
tools/ncbi_blast_plus/ncbi_blastx_wrapper.xml (追加)
tools/ncbi_blast_plus/ncbi_tblastn_wrapper.xml (追加)
tools/ncbi_blast_plus/ncbi_tblastx_wrapper.xml (追加)
tools/new_operations (追加)
tools/new_operations/basecoverage.xml (追加)
tools/new_operations/cluster.xml (追加)
tools/new_operations/column_join.py (追加)
tools/new_operations/column_join.xml (追加)
tools/new_operations/complement.xml (追加)
tools/new_operations/concat.xml (追加)
tools/new_operations/coverage.xml (追加)
tools/new_operations/flanking_features.py (追加)
tools/new_operations/flanking_features.xml (追加)
tools/new_operations/get_flanks.py (追加)
tools/new_operations/get_flanks.xml (追加)
tools/new_operations/gops_basecoverage.py (追加)
tools/new_operations/gops_cluster.py (追加)
tools/new_operations/gops_complement.py (追加)
tools/new_operations/gops_concat.py (追加)
tools/new_operations/gops_coverage.py (追加)
tools/new_operations/gops_intersect.py (追加)
tools/new_operations/gops_join.py (追加)
tools/new_operations/gops_merge.py (追加)
tools/new_operations/gops_subtract.py (追加)
tools/new_operations/intersect.xml (追加)
tools/new_operations/join.xml (追加)
tools/new_operations/merge.xml (追加)
tools/new_operations/operation_filter.py (追加)
tools/new_operations/subtract.xml (追加)
tools/new_operations/subtract_query.py (追加)
tools/new_operations/subtract_query.xml (追加)
tools/new_operations/tables_arithmetic_operations.pl (追加)
tools/new_operations/tables_arithmetic_operations.xml (追加)
tools/next_gen_conversion (追加)
tools/next_gen_conversion/bwa_solid2fastq_modified.pl (追加)
tools/next_gen_conversion/fastq_conversions.py (追加)
tools/next_gen_conversion/fastq_conversions.xml (追加)
tools/next_gen_conversion/fastq_gen_conv.py (追加)
tools/next_gen_conversion/fastq_gen_conv.xml (追加)
tools/next_gen_conversion/solid2fastq.py (追加)
tools/next_gen_conversion/solid2fastq.xml (追加)
tools/next_gen_conversion/solid_to_fastq.py (追加)
tools/next_gen_conversion/solid_to_fastq.xml (追加)
tools/ngs_rna (追加)
tools/ngs_rna/cuffcompare_wrapper.py (追加)
tools/ngs_rna/cuffcompare_wrapper.xml (追加)
tools/ngs_rna/cuffdiff_wrapper.py (追加)
tools/ngs_rna/cuffdiff_wrapper.xml (追加)
tools/ngs_rna/cufflinks_wrapper.py (追加)
tools/ngs_rna/cufflinks_wrapper.xml (追加)
tools/ngs_rna/filter_transcripts_via_tracking.py (追加)
tools/ngs_rna/filter_transcripts_via_tracking.xml (追加)
tools/ngs_rna/tophat_wrapper.py (追加)
tools/ngs_rna/tophat_wrapper.xml (追加)
tools/peak_calling (追加)
tools/peak_calling/macs_wrapper.py (追加)
tools/peak_calling/macs_wrapper.xml (追加)
tools/plotting (追加)
tools/plotting/bar_chart.py (追加)
tools/plotting/bar_chart.xml (追加)
tools/plotting/boxplot.xml (追加)
tools/plotting/histogram.py (追加)
tools/plotting/histogram2.xml (追加)
tools/plotting/plot_filter.py (追加)
tools/plotting/plotter.py (追加)
tools/plotting/r_wrapper.sh (追加)
tools/plotting/scatterplot.py (追加)
tools/plotting/scatterplot.xml (追加)
tools/plotting/xy_plot.xml (追加)
tools/regVariation (追加)
tools/regVariation/best_regression_subsets.py (追加)
tools/regVariation/best_regression_subsets.xml (追加)
tools/regVariation/categorize_elements_satisfying_criteria.pl (追加)
tools/regVariation/categorize_elements_satisfying_criteria.xml (追加)
tools/regVariation/compute_motif_frequencies_for_all_motifs.pl (追加)
tools/regVariation/compute_motif_frequencies_for_all_motifs.xml (追加)
tools/regVariation/compute_motifs_frequency.pl (追加)
tools/regVariation/compute_motifs_frequency.xml (追加)
tools/regVariation/compute_q_values.pl (追加)
tools/regVariation/compute_q_values.xml (追加)
tools/regVariation/delete_overlapping_indels.pl (追加)
tools/regVariation/delete_overlapping_indels.xml (追加)
tools/regVariation/draw_stacked_barplots.pl (追加)
tools/regVariation/draw_stacked_barplots.xml (追加)
tools/regVariation/featureCounter.py (追加)
tools/regVariation/featureCounter.xml (追加)
tools/regVariation/getIndelRates_3way.py (追加)
tools/regVariation/getIndelRates_3way.xml (追加)
tools/regVariation/getIndels.py (追加)
tools/regVariation/getIndels_2way.xml (追加)
tools/regVariation/getIndels_3way.xml (追加)
tools/regVariation/linear_regression.py (追加)
tools/regVariation/linear_regression.xml (追加)
tools/regVariation/maf_cpg_filter.py (追加)
tools/regVariation/maf_cpg_filter.xml (追加)
tools/regVariation/microsats_alignment_level.py (追加)
tools/regVariation/microsats_alignment_level.xml (追加)
tools/regVariation/microsats_mutability.py (追加)
tools/regVariation/microsats_mutability.xml (追加)
tools/regVariation/parseMAF_smallIndels.pl (追加)
tools/regVariation/quality_filter.py (追加)
tools/regVariation/quality_filter.xml (追加)
tools/regVariation/qv_to_bqv.py (追加)
tools/regVariation/qv_to_bqv.xml (追加)
tools/regVariation/rcve.py (追加)
tools/regVariation/rcve.xml (追加)
tools/regVariation/substitution_rates.py (追加)
tools/regVariation/substitution_rates.xml (追加)
tools/regVariation/substitutions.py (追加)
tools/regVariation/substitutions.xml (追加)
tools/regVariation/t_test_two_samples.pl (追加)
tools/regVariation/t_test_two_samples.xml (追加)
tools/regVariation/windowSplitter.py (追加)
tools/regVariation/windowSplitter.xml (追加)
tools/rgenetics (追加)
tools/rgenetics/listFiles.py (追加)
tools/rgenetics/plinkbinJZ.py (追加)
tools/rgenetics/rgCaCo.py (追加)
tools/rgenetics/rgCaCo.xml (追加)
tools/rgenetics/rgCaCo_code.py (追加)
tools/rgenetics/rgClean.py (追加)
tools/rgenetics/rgClean.xml (追加)
tools/rgenetics/rgClean_code.py (追加)
tools/rgenetics/rgEigPCA.py (追加)
tools/rgenetics/rgEigPCA.xml (追加)
tools/rgenetics/rgEigPCA_code.py (追加)
tools/rgenetics/rgGLM.py (追加)
tools/rgenetics/rgGLM.xml (追加)
tools/rgenetics/rgGLM_code.py (追加)
tools/rgenetics/rgGRR.py (追加)
tools/rgenetics/rgGRR.xml (追加)
tools/rgenetics/rgGRR_code.py (追加)
tools/rgenetics/rgGTOOL.py (追加)
tools/rgenetics/rgGTOOL.xml (追加)
tools/rgenetics/rgGTOOL_code.py (追加)
tools/rgenetics/rgHaploView.py (追加)
tools/rgenetics/rgHaploView.xml (追加)
tools/rgenetics/rgHaploView_code.py (追加)
tools/rgenetics/rgLDIndep.py (追加)
tools/rgenetics/rgLDIndep.xml (追加)
tools/rgenetics/rgLDIndep_code.py (追加)
tools/rgenetics/rgManQQ.py (追加)
tools/rgenetics/rgManQQ.xml (追加)
tools/rgenetics/rgManQQ_code.py (追加)
tools/rgenetics/rgPedSub.py (追加)
tools/rgenetics/rgPedSub.xml (追加)
tools/rgenetics/rgPedSub_code.py (追加)
tools/rgenetics/rgQC.py (追加)
tools/rgenetics/rgQC.xml (追加)
tools/rgenetics/rgQC_code.py (追加)
tools/rgenetics/rgQQ.py (追加)
tools/rgenetics/rgQQ.xml (追加)
tools/rgenetics/rgQQ_code.py (追加)
tools/rgenetics/rgRegion.py (追加)
tools/rgenetics/rgRegion.xml (追加)
tools/rgenetics/rgRegion_code.py (追加)
tools/rgenetics/rgTDT.py (追加)
tools/rgenetics/rgTDT.xml (追加)
tools/rgenetics/rgTDT_code.py (追加)
tools/rgenetics/rgfakePed.py (追加)
tools/rgenetics/rgfakePed.xml (追加)
tools/rgenetics/rgfakePed_code.py (追加)
tools/rgenetics/rgfakePhe.py (追加)
tools/rgenetics/rgfakePhe.xml (追加)
tools/rgenetics/rgfakePhe_code.py (追加)
tools/rgenetics/rgtest.sh (追加)
tools/rgenetics/rgtest_one_tool.sh (追加)
tools/rgenetics/rgutils.py (追加)
tools/samtools (追加)
tools/samtools/bam_to_sam.py (追加)
tools/samtools/bam_to_sam.xml (追加)
tools/samtools/pileup_interval.py (追加)
tools/samtools/pileup_interval.xml (追加)
tools/samtools/pileup_parser.pl (追加)
tools/samtools/pileup_parser.xml (追加)
tools/samtools/sam2interval.py (追加)
tools/samtools/sam2interval.xml (追加)
tools/samtools/sam_bitwise_flag_filter.py (追加)
tools/samtools/sam_bitwise_flag_filter.xml (追加)
tools/samtools/sam_merge.py (追加)
tools/samtools/sam_merge.xml (追加)
tools/samtools/sam_merge_code.py (追加)
tools/samtools/sam_pileup.py (追加)
tools/samtools/sam_pileup.xml (追加)
tools/samtools/sam_to_bam.py (追加)
tools/samtools/sam_to_bam.xml (追加)
tools/solid_tools (追加)
tools/solid_tools/maq_cs_wrapper.py (追加)
tools/solid_tools/maq_cs_wrapper.xml (追加)
tools/solid_tools/maq_cs_wrapper_code.py (追加)
tools/solid_tools/qualsolid_boxplot_graph.sh (追加)
tools/solid_tools/solid_qual_boxplot.xml (追加)
tools/solid_tools/solid_qual_stats.py (追加)
tools/solid_tools/solid_qual_stats.xml (追加)
tools/sr_assembly (追加)
tools/sr_assembly/velvetg.xml (追加)
tools/sr_assembly/velvetg_wrapper.py (追加)
tools/sr_assembly/velveth.xml (追加)
tools/sr_assembly/velveth_wrapper.py (追加)
tools/sr_mapping (追加)
tools/sr_mapping/PerM.xml (追加)
tools/sr_mapping/bfast_wrapper.py (追加)
tools/sr_mapping/bfast_wrapper.xml (追加)
tools/sr_mapping/bowtie_color_wrapper.xml (追加)
tools/sr_mapping/bowtie_wrapper.py (追加)
tools/sr_mapping/bowtie_wrapper.xml (追加)
tools/sr_mapping/bwa_wrapper.py (追加)
tools/sr_mapping/bwa_wrapper.xml (追加)
tools/sr_mapping/fastq_statistics.xml (追加)
tools/sr_mapping/lastz_paired_reads_wrapper.py (追加)
tools/sr_mapping/lastz_paired_reads_wrapper.xml (追加)
tools/sr_mapping/lastz_wrapper.py (追加)
tools/sr_mapping/lastz_wrapper.xml (追加)
tools/sr_mapping/srma_wrapper.py (追加)
tools/sr_mapping/srma_wrapper.xml (追加)
tools/stats (追加)
tools/stats/aggregate_binned_scores_in_intervals.xml (追加)
tools/stats/aggregate_scores_in_intervals.py (追加)
tools/stats/column_maker.py (追加)
tools/stats/column_maker.xml (追加)
tools/stats/cor.py (追加)
tools/stats/cor.xml (追加)
tools/stats/correlation.pl (追加)
tools/stats/correlation.xml (追加)
tools/stats/dna_filtering.py (追加)
tools/stats/dna_filtering.xml (追加)
tools/stats/filtering.py (追加)
tools/stats/filtering.xml (追加)
tools/stats/generate_matrix_for_pca_lda.pl (追加)
tools/stats/generate_matrix_for_pca_lda.xml (追加)
tools/stats/grouping.py (追加)
tools/stats/grouping.xml (追加)
tools/stats/gsummary.py (追加)
tools/stats/gsummary.xml (追加)
tools/stats/gsummary.xml.groups (追加)
tools/stats/lda_analy.xml (追加)
tools/stats/plot_from_lda.xml (追加)
tools/stats/r_wrapper.sh (追加)
tools/stats/wiggle_to_simple.py (追加)
tools/stats/wiggle_to_simple.xml (追加)
tools/taxonomy (追加)
tools/taxonomy/find_diag_hits.py (追加)
tools/taxonomy/find_diag_hits.xml (追加)
tools/taxonomy/gi2taxonomy.py (追加)
tools/taxonomy/gi2taxonomy.xml (追加)
tools/taxonomy/lca.py (追加)
tools/taxonomy/lca.xml (追加)
tools/taxonomy/poisson2test.py (追加)
tools/taxonomy/poisson2test.xml (追加)
tools/taxonomy/t2ps_wrapper.py (追加)
tools/taxonomy/t2ps_wrapper.xml (追加)
tools/taxonomy/t2t_report.xml (追加)
tools/validation (追加)
tools/validation/fix_errors.py (追加)
tools/validation/fix_errors.xml (追加)
tools/validation/fix_errors_code.py (追加)
tools/validation/validate.py (追加)
tools/visualization (追加)
tools/visualization/GMAJ.py (追加)
tools/visualization/GMAJ.xml (追加)
tools/visualization/LAJ.py (追加)
tools/visualization/LAJ.xml (追加)
tools/visualization/LAJ_code.py (追加)
tools/visualization/build_ucsc_custom_track.py (追加)
tools/visualization/build_ucsc_custom_track.xml (追加)
tools/visualization/build_ucsc_custom_track_code.py (追加)
transfer_datasets.ini.sample (追加)
universe_wsgi.ini.sample (追加)

Context Navigation

チェンジセット 2 : galaxy-central

異なるフォーマットでダウンロード: